Evidence map›Paper›PMID 36035247›Full record

ArticleHGG advances2022

Personalized structural biology reveals the molecular mechanisms underlying heterogeneous epileptic phenotypes caused by

Souhrid Mukherjee, Thomas A Cassini, Ningning Hu, Tao Yang, Bian Li, Wangzhen Shen, Christopher W Moth, David C Rinker, Jonathan H Sheehan, Joy D Cogan and 9 more

Registry-linked trialAbstract read
In one paragraph

Article in HGG advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. A structurally precise mechanism links an epilepsy-associatedProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Review
  7. CHARMM-GUIJournal of chemical theory and computation · 2023
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Souhrid MukherjeeDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Thomas A CassiniDepartment of Internal Medicine, National Institutes of Health Clinical Center, Bethesda, MD 20814, USA.
Ningning HuDepartment of Neurology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Tao YangDivision of Clinical Pharmacology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Bian LiDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Wangzhen ShenDepartment of Neurology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Christopher W MothCenter for Structural Biology, Vanderbilt University, Nashville, TN 37235, USA.
David C RinkerDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235, USA.
Jonathan H SheehanCenter for Structural Biology, Vanderbilt University, Nashville, TN 37235, USA.
Joy D CoganDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Undiagnosed Diseases Network
John H NewmanPulmonary Hypertension Center, Division of Allergy, Pulmonary and Critical Care Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Rizwan HamidDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Robert L MacdonaldDivision of Clinical Pharmacology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Dan M RodenDivision of Clinical Pharmacology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Jens MeilerDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235, USA.
Georg KuenzeDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235, USA.
John A PhillipsDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
John A CapraDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.

Funding

Vanderbilt Center for Undiagnosed Diseases (VCUD) - BiorepositoryU01HG007674 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COGAN, JOY D, HAMID, RIZWAN · 2014 to 2022
$13.7M
Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey L Neul · 2020 to 2026
$10.3M
WASHINGTON UNIVERSITY SCHOOL OF MEDICINE UNDIAGNOSED DISEASES NETWORK CLINICAL SITEU01HG010215 · NHGRI · WASHINGTON UNIVERSITY · PI DICKSON, PATRICIA I · 2018 to 2022
$3.4M
Personalized Structural Biology: Enabling Exome Interpretation in Undiagnosed DiseasesR01LM013434 · NLM · VANDERBILT UNIVERSITY · PI CAPRA, JOHN ANTHONY, MEILER, JENS · 2021 to 2024
$1.4M
An Atlas of Clinical Associations mapping to Variants within Protein StructuresR01GM126249 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI BUSH, WILLIAM S, CRAWFORD, DANA C · 2018 to 2020
$910k
NHGRI NIH HHS U01 HG007674NHGRI NIH HHS U01 HG010215NICHD NIH HHS P50 HD103537NIGMS NIH HHS R01 GM126249NLM NIH HHS R01 LM013434
6 · The paper itself

Abstract

Whole-exome sequencing (WES) in the clinic has identified several rare monogenic developmental and epileptic encephalopathies (DEE) caused by ion channel variants. However, WES often fails to provide actionable insight for rare diseases, such as DEEs, due to the challenges of interpreting variants of unknown significance (VUS). Here, we describe a "personalized structural biology" (PSB) approach that leverages recent innovations in the analysis of protein 3D structures to address this challenge. We illustrate this approach in an Undiagnosed Diseases Network (UDN) individual with DEE symptoms and a

Indexed as

DEEde novo variantdevelopmental and epileptic encephalopathyelectrophysiologyKCNC2molecular dynamics simulationspersonalized structural biologyrare diseaseUndiagnosed Diseases Networkvariant interpretation

Identifiers

PMID36035247
PMCPMC9399384

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.