Evidence map›Paper›PMID 36035127›Full record

ArticleFrontiers in genetics2022

Rapid and simple analysis of short and long sequencing reads using Duesselpore

Christian Vogeley, Thach Nguyen, Selina Woeste, Jean Krutmann, Thomas Haarmann-Stemmann, Andrea Rossi

Abstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christian VogeleyIUF-Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany.
Thach NguyenIUF-Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany.
Selina WoesteIUF-Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany.
Jean KrutmannIUF-Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany.
Thomas Haarmann-StemmannIUF-Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany.
Andrea RossiIUF-Leibniz Research Institute for Environmental Medicine, Düsseldorf, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptome analysis experiments enable researchers to gain extensive insights into the molecular mechanisms underlying cell physiology and disease. Oxford Nanopore Technologies (ONT) has recently been developed as a fast, miniaturized, portable, and cost-effective alternative to next-generation sequencing (NGS). However, RNA-Seq data analysis software that exploits ONT portability and allows scientists to easily analyze ONT data everywhere without bioinformatics expertise is not widely available. We developed Duesselpore

Indexed as

next-generation sequencingNGS data analysisOxford Nanopore MinION deviceOxford nanopore sequencingRNA-seq analyses

Identifiers

PMID36035127
PMCPMC9403543

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.