Evidence map›Paper›PMID 36032084›Full record

ArticleFrontiers in immunology2022

The immune phenotypes and different immune escape mechanisms in colorectal cancer.

Yihao Mao, Yuqiu Xu, Jiang Chang, Wenju Chang, Yang Lv, Peng Zheng, Zhiyuan Zhang, Zhiqiang Li, Qi Lin, Wentao Tang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Machine learning-based model for CD4Scientific reports · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Advances in immunotyping of colorectal cancer.Frontiers in immunology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Yihao MaoDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Yuqiu XuDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Jiang ChangDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Wenju ChangDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Yang LvDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Peng ZhengDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Zhiyuan ZhangDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Zhiqiang LiDepartment of General Surgery, No.2 Hospital, Nanping, China.
Qi LinDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Wentao TangDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Dexiang ZhuDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Meiling JiDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Guodong HeDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Qingyang FengDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Jianmin XuDepartment of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, China.
Sun Yat-sen University · CNFudan University · CNThe First Affiliated Hospital, Sun Yat-sen University · CNZhongshan Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tumor microenvironment (TME) plays a crucial role in tumor progression and metastasis. However, the immune phenotypes of colorectal cancer (CRC) and the underlying immune escape mechanism have not been studied sufficiently. A total of 1802 and 619 CRC samples from the microarray and TCGA cohorts were enrolled, respectively. The ssGSEA algorithm and unsupervised clustering were used for TME cell infiltration speculation and immune phenotype recognition in the above cohorts. A total of 447 samples from Zhongshan Hospital were collected for validation. Immunohistochemistry was performed in this cohort to quantify TME cell infiltration. The single-cell RNA-seq (scRNA-seq) data of 252,940 cells from 60 CRC samples was analyzed for further mechanistic exploration. CRC samples can be classified into three distinct immune phenotypes. Subtype 1, the immune-active subtype, was characterized by high infiltration of activated adaptive immune cells. Subtype 2, the immune-desert subtype, featured high tumor purity and low infiltration of immune and stromal cells. Subtype 3, the stroma-rich subtype, had high infiltration of stromal cells. The stroma-rich subtype conferred a significantly worse prognosis. The three subtypes had different immune escape mechanisms. The immune-active subtype has the highest immune checkpoint expression level. In comparison, the immune-desert subtype had the lowest immunogenicity and defective antigen presentation. The stroma-rich subtype lacked activated immune cells. In conclusion, distinct immune phenotypes and immune escape mechanisms may provide inspiration and direction for further research on CRC immunotherapy.

Indexed as

Colorectal NeoplasmsTumor MicroenvironmentHumansImmunophenotypingPhenotypePrognosiscolorectal cancerimmune escapeimmune subtypesinfiltration patterntumor microenvironment

Identifiers

PMID36032084
PMCPMC9399611
OpenAlexW4293679385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.