Evidence map›Paper›PMID 36028902›Full record

ArticleHuman genomics2022

On the relationship between tripartite motif-containing 22 single-nucleotide polymorphisms and COVID-19 infection severity.

Nidhal Raheem Juhi Al-Kaabi, Sepideh Chodari Khameneh, Mohadeseh Montazeri, Mahsa Mardasi, Jalal Mosayebi Amroabadi, Fatemeh Sakhaee, Abolfazl Fateh

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Article in Human genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Nidhal Raheem Juhi Al-KaabiDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Sepideh Chodari KhamenehVira Pioneers of Modern Science (VIPOMC), Tehran, Iran.
Mohadeseh MontazeriTissue Engineering and Biomaterials Research Center, National Institute of Genetic, Engineering and Biotechnology (NIGEB), Tehran, Iran.
Mahsa MardasiDepartment of Plant Science and Biotechnology, Faculty of Life Science and Biotechnology, Shahid Beheshti University G.C, Evin, Tehran, Iran.
Jalal Mosayebi AmroabadiArtificial Intelligence and Multi-omics Center (AIMOC), Stavanger, Norway.
Fatemeh SakhaeeDepartment of Mycobacteriology and Pulmonary Research, Pasteur Institute of Iran, Tehran, Iran.
Abolfazl FatehDepartment of Mycobacteriology and Pulmonary Research, Pasteur Institute of Iran, Tehran, Iran. afateh2@gmail.com.
Pasteur Institute of Iran · IRIslamic Azad University, Science and Research Branch · IRNational Institute of Genetic Engineering and Biotechnology · IRShahid Beheshti University · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe tripartite motif containing (TRIM)-22 participates in innate immune responses and exhibits antiviral activities. The present study aimed to assess of the relationship between TRIM22 single-nucleotide polymorphisms and clinical parameters with the coronavirus disease 2019 (COVID-19) infection severity.

methodsTRIM22 polymorphisms (rs7113258, rs7935564, and rs1063303) were genotyped using TaqMan polymerase chain reaction (PCR) assay in 495 dead and 497 improved severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-positive patients.

resultsIn this study, the frequencies of TRIM22 rs1063303 GG, rs7935564 GG, and rs7113258 TT were significantly higher in dead patients than in improved patients, and higher viral load with low PCR Ct value was noticed in dead patients. The multivariate logistic regression analysis revealed that the lower levels of low-density lipoprotein (LDL), cholesterol, PCR Ct value, and lower 25-hydroxyvitamin D, and also higher levels of erythrocyte sedimentation rate (ESR), C-reactive protein (CRP), and TRIM22 rs1063303 GG, rs7113258 TT, and rs3824949 GG genotypes were related to the COVID-19 infection severity.

conclusionOur finding proved the probable relationship between the COVID-19 infection severity with the genotypes of TRIM22 SNPs and clinical parameters. More research is required worldwide to show the association between the COVID-19 infection severity and host genetic factors.

Indexed as

COVID-19Minor Histocompatibility AntigensPolymorphism, Single NucleotideRepressor ProteinsTripartite Motif ProteinsHumansSARS-CoV-2Minor Histocompatibility AntigensRepressor ProteinsTRIM22 protein, humanTripartite Motif ProteinsCoronavirus disease 2019Severe acute respiratory syndrome coronavirus 2Tripartite motif-containing 22

Identifiers

PMID36028902
PMCPMC9412778
OpenAlexW4293176268

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.