Evidence map›Paper›PMID 36028506›Full record

ArticleNature communications2022

Water-organizing motif continuity is critical for potent ice nucleation protein activity.

Jordan Forbes, Akalabya Bissoyi, Lukas Eickhoff, Naama Reicher, Thomas Hansen, Christopher G Bon, Virginia K Walker, Thomas Koop, Yinon Rudich, Ido Braslavsky and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. A Novel Gene Synthesis Platform for Designing Functional Protein Polymers.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  8. Review
  9. Hierarchical assembly and environmental enhancement of bacterial ice nucleators.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jordan ForbesDepartment of Biomedical and Molecular Sciences, Queen's University, K7L 3N6, Kingston, ON, Canada.
Akalabya Bissoyi *The Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Biochemistry, Food Science, and Nutrition, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel.
Lukas Eickhoff *Bielefeld University, Faculty of Chemistry, D-33615, Bielefeld, Germany.ORCID 0000-0002-1983-9442
Naama Reicher *Department of Earth and Planetary Sciences, The Weizmann Institute of Science, Rehovot, 7610001, Israel.
Thomas HansenDepartment of Biomedical and Molecular Sciences, Queen's University, K7L 3N6, Kingston, ON, Canada.ORCID 0000-0001-7515-9540
Christopher G BonDepartment of Biomedical and Molecular Sciences, Queen's University, K7L 3N6, Kingston, ON, Canada.ORCID 0000-0002-3994-803X
Virginia K WalkerDepartment of Biology, Queen's University, Kingston, ON, Canada.ORCID 0000-0001-5869-8905
Thomas KoopBielefeld University, Faculty of Chemistry, D-33615, Bielefeld, Germany.ORCID 0000-0002-7571-3684
Yinon RudichDepartment of Earth and Planetary Sciences, The Weizmann Institute of Science, Rehovot, 7610001, Israel.ORCID 0000-0003-3149-0201
Ido BraslavskyThe Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Biochemistry, Food Science, and Nutrition, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel.ORCID 0000-0001-8985-8211
Peter L DaviesDepartment of Biomedical and Molecular Sciences, Queen's University, K7L 3N6, Kingston, ON, Canada. peter.davies@queensu.ca.

Funding

CIHR FRN 148422
6 · The paper itself

Abstract

Bacterial ice nucleation proteins (INPs) can cause frost damage to plants by nucleating ice formation at high sub-zero temperatures. Modeling of Pseudomonas borealis INP by AlphaFold suggests that the central domain of 65 tandem sixteen-residue repeats forms a beta-solenoid with arrays of outward-pointing threonines and tyrosines, which may organize water molecules into an ice-like pattern. Here we report that mutating some of these residues in a central segment of P. borealis INP, expressed in Escherichia coli, decreases ice nucleation activity more than the section's deletion. Insertion of a bulky domain has the same effect, indicating that the continuity of the water-organizing repeats is critical for optimal activity. The ~10 C-terminal coils differ from the other 55 coils in being more basic and lacking water-organizing motifs; deletion of this region eliminates INP activity. We show through sequence modifications how arrays of conserved motifs form the large ice-nucleating surface required for potency.

Indexed as

Bacterial Outer Membrane ProteinsWaterEscherichia coliPseudomonasBacterial Outer Membrane Proteinsice nucleation proteinWater

Identifiers

PMID36028506
PMCPMC9418140

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.