Evidence map›Paper›PMID 36028493›Full record

ArticleNature communications2022

DAXX-ATRX regulation of p53 chromatin binding and DNA damage response.

Nitish Gulve, Chenhe Su, Zhong Deng, Samantha S Soldan, Olga Vladimirova, Jayamanna Wickramasinghe, Hongwu Zheng, Andrew V Kossenkov, Paul M Lieberman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 48 citations in OpenAlex.

  1. Epigenetic regulation of transgenes.Journal of biotechnology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nitish GulveThe Wistar Institute, Philadelphia, PA, 19104, USA.
Chenhe SuThe Wistar Institute, Philadelphia, PA, 19104, USA.
Zhong DengThe Wistar Institute, Philadelphia, PA, 19104, USA.
Samantha S SoldanThe Wistar Institute, Philadelphia, PA, 19104, USA.
Olga VladimirovaThe Wistar Institute, Philadelphia, PA, 19104, USA.
Jayamanna WickramasingheThe Wistar Institute, Philadelphia, PA, 19104, USA.
Hongwu ZhengWeill School of Medicine, Cornell University, New York, NY, USA.
Andrew V KossenkovThe Wistar Institute, Philadelphia, PA, 19104, USA.
Paul M LiebermanThe Wistar Institute, Philadelphia, PA, 19104, USA. lieberman@wistar.org.ORCID 0000-0002-3935-9921
The Wistar Institute · USCornell University · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
Epigenetic Regulation of Epstein-Barr Virus Latency ProgramsR01DE017336 · NIDCR · WISTAR INSTITUTE · PI PAUL M. LIEBERMAN · 2005 to 2026
$6.5M
Regulation of KSHV LatencyR01CA117830 · NCI · WISTAR INSTITUTE · PI PAUL M. LIEBERMAN · 2006 to 2026
$6.4M
Role of TERRA in Telomere Maintenance and Telomere Stress ResponseR01CA140652 · NCI · WISTAR INSTITUTE · PI LIEBERMAN, PAUL M. · 2010 to 2025
$6.0M
Integrative Approach to Comprehensive Analysis of High Throughput Data on a Cancer Center LevelR50CA211199 · NCI · WISTAR INSTITUTE · PI Andrew V Kossenkov · 2016 to 2026
$1.6M
NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA117830NCI NIH HHS R01 CA140652NCI NIH HHS R50 CA211199NIDCR NIH HHS R01 DE017336
6 · The paper itself

Abstract

DAXX and ATRX are tumor suppressor proteins that form a histone H3.3 chaperone complex and are frequently mutated in cancers with the alternative lengthening of telomeres (ALT). Here, we show that DAXX and ATRX knock-out (KO) U87-T cells that have acquired ALT-like features have defects in p53 chromatin binding and DNA damage response. RNA-seq analysis revealed that p53 pathway is among the most perturbed. ChIP-seq and ATAC-seq revealed a genome-wide reduction in p53 DNA-binding and corresponding loss of chromatin accessibility at many p53 response elements across the genome. Both DAXX and ATRX null cells showed a depletion of histone H3.3 and accumulation of γH2AX at many p53 sites, including subtelomeres. These findings indicate that loss of DAXX or ATRX can compromise p53 chromatin binding and p53 DNA damage response in ALT-like cells, providing a link between histone composition, chromatin accessibility and tumor suppressor function of p53.

Indexed as

ChromatinHistonesCo-Repressor ProteinsDNA DamageDNA HelicasesGenes, Tumor SuppressorMolecular ChaperonesNuclear ProteinsTumor Suppressor Protein p53X-linked Nuclear ProteinChromatinCo-Repressor ProteinsDNA HelicasesHistonesMolecular ChaperonesNuclear ProteinsTumor Suppressor Protein p53X-linked Nuclear Protein

Identifiers

PMID36028493
PMCPMC9418176
OpenAlexW4293680959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.