Evidence map›Paper›PMID 36028256›Full record

Observational studyThe European respiratory journal2022

Utility of whole genome sequencing in assessing risk and clinically relevant outcomes for pulmonary fibrosis.

David Zhang, Chad A Newton, Binhan Wang, Gundula Povysil, Imre Noth, Fernando J Martinez, Ganesh Raghu, David Goldstein, Christine Kim Garcia

Open access · greenAbstract readObservational Study
In one paragraph

Observational study in The European respiratory journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Age-dependent Genetic Risk in Pulmonary Fibrosis Patients and Relatives.medRxiv : the preprint server for health sciences · 2026
    Article
  9. Article
  10. Progressive pulmonary fibrosis: the importance of identification and intervention.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  11. Adult male patients withERJ open research · 2026
    Article
  12. Article
  13. Review
  14. Genetic Familial Interstitial Lung Disease.Clinics in chest medicine · 2025
    Review
  15. Pulmonary Fibrosis-Focusing on the Future: Aspen Lung Conference 2024 Summary.American journal of respiratory cell and molecular biology · 2025
    Article
  16. Genetic Associations in Non-Europeans with Pulmonary Fibrosis: Analysis of the All of Us Cohort.American journal of respiratory and critical care medicine · 2025
    Article
  17. Dominant Form ofAmerican journal of respiratory and critical care medicine · 2025
    Article
  18. Article
  19. Article
  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

David ZhangDept of Medicine, Columbia University Irving Medical Center, New York, NY, USA dz2409@cumc.columbia.edu.ORCID https://orcid.org/0000-0002-2983-9796
Chad A NewtonDept of Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID https://orcid.org/0000-0001-5256-9029
Binhan WangDept of Medicine, Columbia University Irving Medical Center, New York, NY, USA.
Gundula PovysilInstitute for Genomic Medicine, Columbia University Irving Medical Center, New York, NY, USA.ORCID https://orcid.org/0000-0003-4625-5909
Imre NothDept of Medicine, University of Virginia, Charlottesville, VA, USA.
Fernando J MartinezDept of Medicine, Weill-Cornell Medical Center, New York, NY, USA.ORCID https://orcid.org/0000-0002-2412-3182
Ganesh RaghuDept of Medicine, University of Washington Medical Center, Seattle, WA, USA.ORCID https://orcid.org/0000-0001-7506-6643
David GoldsteinInstitute for Genomic Medicine, Columbia University Irving Medical Center, New York, NY, USA.ORCID https://orcid.org/0000-0002-1111-2820
Christine Kim GarciaDept of Medicine, Columbia University Irving Medical Center, New York, NY, USA.ORCID https://orcid.org/0000-0002-0771-1249
Columbia University Irving Medical Center · USColumbia University · USCornell University · USThe University of Texas Southwestern Medical Center · USUniversity of Virginia · USUniversity of Washington Medical Center · US

Funding

UT Southwestern Center for Translational Medicine (UL1/KL2/TL1)UL1TR001105 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2013 to 2017
$24.5M
1/2 Prospective tReatment EffiCacy in IPF uSlng genOtype for Nac Selection (PRECISIONS) trial and Molecular Endophenotyping in Idiopathic Pulmonary Fibrosis and Interstitial Lung Diseases studyUH3HL145266 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MARTINEZ, FERNANDO J, NOTH, IMRE · 2021 to 2025
$11.6M
Pulmonary Fibrosis and Telomerase DysfunctionR01HL093096 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI GARCIA, CHRISTINE KIM · 2009 to 2024
$6.9M
The Columbia University Training Program in Lung ScienceT32HL105323 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Jahar Bhattacharya, Wellington V. Cardoso · 2011 to 2026
$4.7M
Architectural structure and regulation of TOLLIP in IPFR01HL130796 · NHLBI · UNIVERSITY OF VIRGINIA · PI NOTH, IMRE · 2016 to 2019
$3.1M
Molecular Markers of Idiopathic Pulmonary Fibrosis ProgressionK23HL148498 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI NEWTON, CHAD ALAN · 2020 to 2024
$891k
NCATS NIH HHS UL1 TR001105NHLBI NIH HHS K23 HL148498NHLBI NIH HHS R01 HL093096NHLBI NIH HHS R01 HL130796NHLBI NIH HHS T32 HL105323NHLBI NIH HHS UH3 HL145266
6 · The paper itself

Abstract

backgroundWhole genome sequencing (WGS) can detect variants and estimate telomere length. The clinical utility of WGS in estimating risk, progression and survival of pulmonary fibrosis patients is unknown.

methodsIn this observational cohort study, we performed WGS on 949 patients with idiopathic pulmonary fibrosis or familial pulmonary fibrosis to determine rare and common variant genotypes, estimate telomere length and assess the association of genomic factors with clinical outcomes.

resultsWGS estimates of telomere length correlated with quantitative PCR (R=0.65) and Southern blot (R=0.71) measurements. Rare deleterious qualifying variants were found in 14% of the total cohort, with a five-fold increase in those with a family history of disease

conclusionAs a single test, WGS can inform pulmonary fibrosis genetic-mediated risk, evaluate the functional effect of telomere-related variants by estimating telomere length, and prognosticate clinically relevant disease outcomes.

Indexed as

Idiopathic Pulmonary FibrosisGenetic Predisposition to DiseaseHumansRisk FactorsTelomereWhole Genome Sequencing

Identifiers

PMID36028256
PMCPMC10038316
OpenAlexW4293206733

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.