Evidence map›Paper›PMID 36026446›Full record

ArticleScience advances2022

Structural plasticity enables evolution and innovation of RuBisCO assemblies.

Albert K Liu, Jose H Pereira, Alexander J Kehl, Daniel J Rosenberg, Douglas J Orr, Simon K S Chu, Douglas M Banda, Michal Hammel, Paul D Adams, Justin B Siegel and 1 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Rubisco kinetic acclimation at the holoenzyme level.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Rubisco is slow across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. In vivo directed evolution of an ultrafast Rubisco from a semianaerobic environment imparts oxygen resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Engineering Rubisco to enhance COSynthetic and systems biotechnology · 2024
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Albert K LiuDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0001-9500-0449
Jose H PereiraTechnology Division, Joint BioEnergy Institute, Emeryville, CA 94608, USA.ORCID 0000-0002-8456-1774
Alexander J KehlBiophysics Graduate Group, University of California, Davis, Davis, CA, USA.ORCID 0000-0002-0993-5828
Daniel J RosenbergMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0001-8017-8156
Douglas J OrrLancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK.ORCID 0000-0003-1217-537X
Simon K S ChuBiophysics Graduate Group, University of California, Davis, Davis, CA, USA.
Douglas M BandaEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID 0000-0001-6198-2923
Michal HammelMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0002-5610-9289
Paul D AdamsTechnology Division, Joint BioEnergy Institute, Emeryville, CA 94608, USA.ORCID 0000-0001-9333-8219
Justin B SiegelGenome Center, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0003-1782-4076
Patrick M ShihDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-2119-3345
Lawrence Berkeley National Laboratory · USUniversity of California, Davis · USCalifornia State University, Sacramento · USLancaster University · GB

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
NIGMS NIH HHS P30 GM124169
6 · The paper itself

Abstract

Oligomerization is a core structural feature that defines the form and function of many proteins. Most proteins form molecular complexes; however, there remains a dearth of diversity-driven structural studies investigating the evolutionary trajectory of these assemblies. Ribulose-1,5-bisphosphate carboxylase-oxygenase (RuBisCO) is one such enzyme that adopts multiple assemblies, although the origins and distribution of its different oligomeric states remain cryptic. Here, we retrace the evolution of ancestral and extant form II RuBisCOs, revealing a complex and diverse history of oligomerization. We structurally characterize a newly discovered tetrameric RuBisCO, elucidating how solvent-exposed surfaces can readily adopt new interactions to interconvert or give rise to new oligomeric states. We further use these principles to engineer and demonstrate how changes in oligomerization can be mediated by relatively few mutations. Our findings yield insight into how structural plasticity may give rise to new oligomeric states.

Identifiers

PMID36026446
PMCPMC9417184
OpenAlexW4293155763

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.