Evidence map›Paper›PMID 36016866›Full record

ArticleBioinformatics and biology insights2022

Prediction of Bacterial sRNAs Using Sequence-Derived Features and Machine Learning.

Tony Jha, Jovinna Mendel, Hyuk Cho, Madhusudan Choudhary

Abstract read
In one paragraph

Article in Bioinformatics and biology insights, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tony JhaDepartment of Mathematics, University of California, Berkeley, Berkeley, CA, USA.
Jovinna MendelDepartment of Biological Sciences, Sam Houston State University, Huntsville, TX, USA.
Hyuk ChoDepartment of Computer Science, Sam Houston State University, Huntsville, TX, USA.
Madhusudan ChoudharyDepartment of Biological Sciences, Sam Houston State University, Huntsville, TX, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small ribonucleic acid (sRNA) sequences are 50-500 nucleotide long, noncoding RNA (ncRNA) sequences that play an important role in regulating transcription and translation within a bacterial cell. As such, identifying sRNA sequences within an organism's genome is essential to understand the impact of the RNA molecules on cellular processes. Recently, numerous machine learning models have been applied to predict sRNAs within bacterial genomes. In this study, we considered the sRNA prediction as an imbalanced binary classification problem to distinguish minor positive sRNAs from major negative ones within imbalanced data and then performed a comparative study with six learning algorithms and seven assessment metrics. First, we collected numerical feature groups extracted from known sRNAs previously identified in

Indexed as

accuracy paradoxAdaBoostimbalance datamachine learningsRNAsRNA predictionXGBoost

Identifiers

PMID36016866
PMCPMC9397377

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.