Evidence map›Paper›PMID 36016319›Full record

ArticleViruses2022

The Emergence and Pathogenesis of Recombinant Viruses Associated with NADC34-like Strains and the Predominant Circulating Strains of Porcine Reproductive and Respiratory Syndrome Virus in Southern China.

Xindong Wang, Kang Zhang, Qingrong Mo, Guochang Chen, Jing Lv, Jing Huang, Yanli Pang, Hao Wang, Wenbo Liu, Kai Huang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Xindong WangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.ORCID 0000-0001-9685-2192
Kang ZhangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Qingrong MoCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Guochang ChenCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Jing LvCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Jing HuangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Yanli PangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Hao WangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Wenbo LiuCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Kai HuangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Xiangling MinCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Tongwei RenCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Kang OuyangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Ying ChenCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Weijian HuangCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Zuzhang WeiCollege of Animal Science and Technology, Guangxi University, No.100 Daxue Road, Nanning 530005, China.
Guangxi University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since its recent appearance in China, the NADC30-like strains of porcine reproductive and respiratory syndrome virus 2 (PRRSV-2) have caused an expanding epidemic, and this has further expanded the genetic diversity of PRRSV. In this study, three NADC30-like strains-GXFCG20210401, GXQZ20210403 and GXNN20210506-were isolated from pig serum samples obtained in Guangxi, and their genomes were sequenced. A comparative analysis of the whole genomes showed that the three strains were most similar to NADC30 (88.3-88.7%). In particular, the non-structural protein coding regions (nsp1, nsp4-5, nsp7-8 and nsp9) showed the highest similarities to JXA1, and the ORF2a-ORF5 regions showed the highest similarities to NADC34. The three strains had same discontinuous deletions of 111+1+19 amino acids in the nsp2 region, which were similar to the NADC30-like strains. Phylogenetic tree analysis based on the ORF5 gene showed that the three PRRSV isolates were divided into lineage 1.5 along with the representative NADC34-like strains, but they were classified as NADC30-like strains with respect to the whole genome and nsp2 evolutionary trees. Recombinant analysis revealed complex recombination patterns in the genomes of the three strains, which likely originated from multiple recombination events among JXA1-like, NADC30-like and NADC34-like strains. The results from animal experiments showed that the GXQZ20210403 strain was 20% lethal to piglets and caused more severe clinical reactions than GXFCG20210401, and both recombinant strains were similar in terms of pathogenicity to the previously reported NADC34 strains. This study demonstrates that NADC34-like strains of PRRSV have been circulating in the southern provinces of China and have exchanged genomes with several other indigenous strains. In addition, differences in recombination patterns may cause different clinical pathogenicity and indicate the importance of the surveillance and preventive control of recombinant strains.

Indexed as

OrthopoxvirusPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusAnimalsChinaGenetic VariationGenome, ViralPhylogenyRecombination, GeneticSwinegenetic evolutionNADC34-likepathogenicityporcine reproductive and respiratory syndrome virusrecombination

Identifiers

PMID36016319
PMCPMC9416154
OpenAlexW4289528934

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.