Evidence map›Paper›PMID 36016262›Full record

ArticleViruses2022

The Role of Lebanon in the COVID-19 Butterfly Effect: The B.1.398 Example.

Dalal Nour, Rayane Rafei, Alessandra P Lamarca, Luiz G P de Almeida, Marwan Osman, Mohamad Bachar Ismail, Hassan Mallat, Atika Berry, Gwendolyne Burfin, Quentin Semanas and 7 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Dalal NourLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.
Rayane RafeiLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.ORCID 0000-0001-9633-1290
Alessandra P LamarcaLaboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis, RJ 25651-075, Brazil.ORCID 0000-0001-7586-7280
Luiz G P de AlmeidaLaboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis, RJ 25651-075, Brazil.ORCID 0000-0002-7124-2715
Marwan OsmanLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.ORCID 0000-0002-6235-2760
Mohamad Bachar IsmailLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.ORCID 0000-0003-4347-1913
Hassan MallatLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.
Atika BerryHead of the Preventive Medicine Department, Ministry of Public Health, Beirut 1001, Lebanon.
Gwendolyne BurfinLaboratoire de Virologie, Institut des Agents Infectieux, Laboratoire Associé au Centre National de Référence des Virus des Infections Respiratoires, Hospices Civils de Lyon, F-69004 Lyon, France.
Quentin SemanasLaboratoire de Virologie, Institut des Agents Infectieux, Laboratoire Associé au Centre National de Référence des Virus des Infections Respiratoires, Hospices Civils de Lyon, F-69004 Lyon, France.
Laurence JossetLaboratoire de Virologie, Institut des Agents Infectieux, Laboratoire Associé au Centre National de Référence des Virus des Infections Respiratoires, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID 0000-0002-7158-1186
Hamad HassanFaculty of Public Health, Lebanese University, Beirut 1001, Lebanon.
Fouad DabboussiLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.
Bruno LinaLaboratoire de Virologie, Institut des Agents Infectieux, Laboratoire Associé au Centre National de Référence des Virus des Infections Respiratoires, Hospices Civils de Lyon, F-69004 Lyon, France.ORCID 0000-0002-8959-2123
Philippe ColsonIHU Méditerranée Infection, 19-21 boulevard Jean Moulin, 13005 Marseille, France.ORCID 0000-0001-6285-0308
Ana Tereza R VasconcelosLaboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis, RJ 25651-075, Brazil.ORCID 0000-0002-4632-2086
Monzer HamzeLaboratoire Microbiologie Santé et Environnement (LMSE), Doctoral School for Science & Technology, Faculty of Public Health, Lebanese University, Tripoli 1300, Lebanon.ORCID 0000-0001-7466-5118
Lebanese University · LBUniversité Claude Bernard Lyon 1 · FRLaboratório Nacional de Computação Científica · BRAix-Marseille Université · FRAtkins (United States) · USMinistry of Public Health · LB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study, we provide a retrospective genomic surveillance of the SARS-CoV-2 pandemic in Lebanon; we newly sequence the viral genomes of 200 nasopharyngeal samples collected between July 2020 and February 2021 from patients in different regions of Lebanon and from travelers crossing the Lebanese-Syrian border, and we also analyze the Lebanese genomic dataset available at GISAID. Our results show that SARS-CoV-2 infections in Lebanon during this period were shaped by the turnovers of four dominant SARS-CoV-2 lineages, with B.1.398 being the first to thoroughly dominate. Lebanon acted as a dispersal center of B.1.398 to other countries, with intercontinental transmissions being more common than within-continent. Within the country, the district of Tripoli, which was the source of 43% of the total B.1.398 sequences in our study, was identified as being an important source of dispersal in the country. In conclusion, our findings exemplify the butterfly effect, by which a lineage that emerges in a small area can be spread around the world, and highlight the potential role of developing countries in the emergence of new variants.

Indexed as

COVID-19HumansLebanonPandemicsRetrospective StudiesSARS-CoV-2B.1.398dispersalLebanonlineagesSARS-CoV-2

Identifiers

PMID36016262
PMCPMC9412248
OpenAlexW4288492208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.