Evidence map›Paper›PMID 36014090›Full record

ArticleMicroorganisms2022

Unraveling the Genomic Potential of the Thermophilic Bacterium

Júnia Schultz, Mariana Teixeira Dornelles Parise, Doglas Parise, Laenne G Medeiros, Thiago J Sousa, Rodrigo B Kato, Ana Paula Trovatti Uetanabaro, Fabrício Araújo, Rommel Thiago Jucá Ramos, Siomar de Castro Soares and 4 more

Abstract read
In one paragraph

Article in Microorganisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Expression and Functional Analysis of the Compact ThermophilicInternational journal of molecular sciences · 2023
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Júnia SchultzRed Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Makkah 23955, Saudi Arabia.ORCID 0000-0002-8147-4659
Mariana Teixeira Dornelles PariseInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.ORCID 0000-0003-4101-1016
Doglas PariseInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.ORCID 0000-0002-0947-3459
Laenne G MedeirosLaboratory of Molecular Microbial Ecology, Institute of Microbiology, Federal University of Rio de Janeiro, Rio de Janeiro 21941-902, RJ, Brazil.
Thiago J SousaInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.
Rodrigo B KatoInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.ORCID 0000-0002-9046-1702
Ana Paula Trovatti UetanabaroInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.ORCID 0000-0003-3992-8474
Fabrício AraújoInstitute of Biological Sciences, Federal University of Pará, Belém 66075-110, PA, Brazil.ORCID 0000-0001-8134-5964
Rommel Thiago Jucá RamosInstitute of Biological Sciences, Federal University of Pará, Belém 66075-110, PA, Brazil.
Siomar de Castro SoaresInstitute of Biological and Natural Sciences, Federal University of Triângulo Mineiro, Uberaba 38025-180, MG, Brazil.ORCID 0000-0001-7299-3724
Bertram BrenigDepartment of Molecular Biology of Livestock, Institute of Veterinary Medicine, Georg August University, 37077 Göttingen, Germany.ORCID 0000-0002-7635-9656
Vasco Ariston de Carvalho AzevedoInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.ORCID 0000-0002-4775-2280
Aristóteles Góes-NetoInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, MG, Brazil.ORCID 0000-0002-7692-6243
Alexandre S RosadoRed Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Makkah 23955, Saudi Arabia.ORCID 0000-0001-5135-1394

Funding

King Abdullah University of Science and Technology Baseline Grant
6 · The paper itself

Abstract

Antarctica is a mosaic of extremes. It harbors active polar volcanoes, such as Deception Island, a marine stratovolcano having notable temperature gradients over very short distances, with the temperature reaching up to 100 °C near the fumaroles and subzero temperatures being noted in the glaciers. From the sediments of Deception Island, we isolated representatives of the genus Anoxybacillus, a widely spread genus that is mainly encountered in thermophilic environments. However, the phylogeny of this genus and its adaptive mechanisms in the geothermal sites of cold environments remain unknown. To the best of our knowledge, this is the first study to unravel the genomic features and provide insights into the phylogenomics and metabolic potential of members of the genus Anoxybacillus inhabiting the Antarctic thermophilic ecosystem. Here, we report the genome sequencing data of seven A. flavithermus strains isolated from two geothermal sites on Deception Island, Antarctic Peninsula. Their genomes were approximately 3.0 Mb in size, had a G + C ratio of 42%, and were predicted to encode 3500 proteins on average. We observed that the strains were phylogenomically closest to each other (Average Nucleotide Identity (ANI) > 98%) and to A. flavithermus (ANI 95%). In silico genomic analysis revealed 15 resistance and metabolic islands, as well as genes related to genome stabilization, DNA repair systems against UV radiation threats, temperature adaptation, heat- and cold-shock proteins (Csps), and resistance to alkaline conditions. Remarkably, glycosyl hydrolase enzyme-encoding genes, secondary metabolites, and prophage sequences were predicted, revealing metabolic and cellular capabilities for potential biotechnological applications.

Indexed as

Anoxybacillusantarcticacomparative genomicsphylogenypolar volcanopotential metabolic functions

Identifiers

PMID36014090
PMCPMC9413872

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.