Evidence map›Paper›PMID 36012753›Full record

ArticleInternational journal of molecular sciences2022

Salt Dependence of DNA Binding Activity of Human Transcription Factor Dlx3.

Ho-Seong Jin, Juyeon Son, Yeo-Jin Seo, Seo-Ree Choi, Hye-Bin Ahn, Youyeon Go, Juhee Lim, Kwang-Im Oh, Kyoung-Seok Ryu, Joon-Hwa Lee

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ho-Seong JinDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Juyeon SonDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Yeo-Jin SeoDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Seo-Ree ChoiDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Hye-Bin AhnDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Youyeon GoDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Juhee LimDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.
Kwang-Im OhDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.ORCID 0000-0002-3304-2659
Kyoung-Seok RyuProtein Structure Research Team, Korea Basic Science Institute, Ochang 28119, Korea.
Joon-Hwa LeeDepartment of Chemistry and RINS, Gyeongsang National University, Jinju 52828, Korea.ORCID 0000-0003-3137-4585
Gyeongsang National University · KRKorea Basic Science Institute · KR

Funding

National Research Foundation of Korea 2020R1A2C1006909National Research Foundation of Korea 2022R1A4A1021817Samsung Science and Technology Foundation SSTF-BA1701-10
6 · The paper itself

Abstract

Distal-less 3 (Dlx3) is a homeobox-containing transcription factor and plays a crucial role in the development and differentiation process. Human Dlx3 consists of two transactivation domains and a homeobox domain (HD) that selectively binds to the consensus site (5'-TAATT-3') of the DNA duplex. Here, we performed chemical shift perturbation experiments on Dlx3-HD in a complex with a 10-base-paired (10-bp) DNA duplex under various salt conditions. We also acquired the imino proton spectra of the 10-bp DNA to monitor the changes in base-pair stabilities during titration with Dlx3-HD. Our study demonstrates that Dlx3-HD selectively recognizes its consensus DNA sequences through the α3 helix and L1 loop regions with a unique dynamic feature. The dynamic properties of the binding of Dlx3-HD to its consensus DNA sequence can be modulated by varying the salt concentrations. Our study suggested that this unique structural and dynamic feature of Dlx3-HD plays an important role in target DNA recognition, which might be associated with tricho-dento-osseous syndrome.

Indexed as

Homeodomain ProteinsSaltsTranscription FactorsDNAGenes, HomeoboxHumansDistal-less homeobox proteinsDNAHomeodomain ProteinsSaltsTranscription Factorsbase-pair stabilitychemical shift perturbationDNA–protein interactionNMRsalt dependencetranscription factor

Identifiers

PMID36012753
PMCPMC9409194
OpenAlexW4292687055

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.