Evidence map›Paper›PMID 36010563›Full record

ReviewCells2022

Review of Current Human Genome-Scale Metabolic Models for Brain Cancer and Neurodegenerative Diseases.

Ali Kishk, Maria Pires Pacheco, Tony Heurtaux, Lasse Sinkkonen, Jun Pang, Sabrina Fritah, Simone P Niclou, Thomas Sauter

Abstract readReview
In one paragraph

Review in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ali KishkDepartment of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.ORCID 0000-0003-3710-5909
Maria Pires PachecoDepartment of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.ORCID 0000-0001-7956-8093
Tony HeurtauxDepartment of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.ORCID 0000-0002-1709-5312
Lasse SinkkonenDepartment of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.ORCID 0000-0002-4223-3027
Jun PangDepartment of Computer Science, University of Luxembourg, L-4364 Esch-sur-Alzette, Luxembourg.ORCID 0000-0002-4521-4112
Sabrina FritahNORLUX Neuro-Oncology Laboratory, Luxembourg Institute of Health, Department of Cancer Research, L-1526 Luxembourg, Luxembourg.
Simone P NiclouNORLUX Neuro-Oncology Laboratory, Luxembourg Institute of Health, Department of Cancer Research, L-1526 Luxembourg, Luxembourg.ORCID 0000-0002-3417-9534
Thomas SauterDepartment of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.ORCID 0000-0001-8225-2954

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brain disorders represent 32% of the global disease burden, with 169 million Europeans affected. Constraint-based metabolic modelling and other approaches have been applied to predict new treatments for these and other diseases. Many recent studies focused on enhancing, among others, drug predictions by generating generic metabolic models of brain cells and on the contextualisation of the genome-scale metabolic models with expression data. Experimental flux rates were primarily used to constrain or validate the model inputs. Bi-cellular models were reconstructed to study the interaction between different cell types. This review highlights the evolution of genome-scale models for neurodegenerative diseases and glioma. We discuss the advantages and drawbacks of each approach and propose improvements, such as building bi-cellular models, tailoring the biomass formulations for glioma and refinement of the cerebrospinal fluid composition.

Indexed as

Brain NeoplasmsGliomaNeurodegenerative DiseasesBiomassGenome, HumanHumansastrocytebrain metabolismgliomametabolic modellingneurodegenerative diseasesneuron

Identifiers

PMID36010563
PMCPMC9406599

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.