Evidence map›Paper›PMID 36008952›Full record

ArticleBiomolecules2022

Identification of the Antigens Recognised by Colorectal Cancer Patients Using Sera from Patients Who Exhibit a Crohn's-like Lymphoid Reaction.

Viktoriya B Boncheva, Michael Linnebacher, Said Kdimati, Hannah Draper, Laurence Orchard, Ken I Mills, Gerald O'Sullivan, Mark Tangney, Barbara-Ann Guinn

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Viktoriya B BonchevaDepartment of Life Sciences, University of Bedfordshire, Park Square, Luton LU1 3JU, UK.ORCID 0000-0003-2589-0161
Michael LinnebacherDepartment of General Surgery, Molecular Oncology and Immunotherapy, University Medical Center Rostock, Schillingallee 69, 18057 Rostock, Germany.ORCID 0000-0001-8054-1402
Said KdimatiDepartment of General Surgery, Molecular Oncology and Immunotherapy, University Medical Center Rostock, Schillingallee 69, 18057 Rostock, Germany.ORCID 0000-0003-4513-7847
Hannah DraperHull York Medical School, University of Hull, Cottingham Road, Kingston-upon-Hull HU6 7RX, UK.
Laurence OrchardCancer Sciences, Southampton University Hospitals Trust, University of Southampton, Southampton SO16 6YD, UK.
Ken I MillsPatrick G. Johnson Centre for Cancer Research, Queen's University Belfast, Lisburn Road, Belfast BT9 7AE, UK.ORCID 0000-0002-6362-4481
Gerald O'SullivanCancer Research@UCC, Cork, Ireland.
Mark TangneyCancer Research@UCC, Cork, Ireland.ORCID 0000-0002-6314-1260
Barbara-Ann GuinnDepartment of Biomedical Sciences, University of Hull, Cottingham Road, Kingston-upon-Hull HU6 7RX, UK.ORCID 0000-0003-0639-4541
University of Hull · GBUniversity of Rostock · DEQueen's University Belfast · GBUniversity College Cork · IEUniversity of Bedfordshire · GBUniversity of Southampton · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A Crohn’s-like lymphoid reaction (CLR) is observed in about 15% of colorectal cancer (CRC) patients and is associated with favourable outcomes. To identify the immune targets recognised by CRC CLR patient sera, we immunoscreened a testes cDNA library with sera from three patients. Immunoscreening of the 18 antigens identified by SEREX with sera from normal donors showed that only the heavy chain of IgG3 (IGHG3) and a novel antigen we named UOB-COL-7, were solely recognised by sera from CRC CLR patients. ELISA showed an elevation in IgG3 levels in patients with CRC (p = 0.01). To extend our studies we analysed the expression of our SEREX-identified antigens using the RNA-sequencing dataset (GSE5206). We found that the transcript levels of multiple IGHG probesets were highly significant (p < 0.001) in their association with clinical features of CRC while above median levels of DAPK1 (p = 0.005) and below median levels of GTF2H5 (p = 0.004) and SH3RF2 (p = 0.02) were associated with improved overall survival. Our findings demonstrate the potential of SEREX-identified CRC CLR antigens to act as biomarkers for CRC and provide a rationale for their further characterization and validation.

Indexed as

Colorectal NeoplasmsCrohn DiseaseCarrier ProteinsGene LibraryHumansImmunoglobulin GOncogene ProteinsCarrier ProteinsImmunoglobulin GOncogene ProteinsSH3RF2 protein, humancolon cancercrohn’s-like lymphoid reaction (CLR)immunoglobulin heavy chainimmunotherapySEREX

Identifiers

PMID36008952
PMCPMC9406176
OpenAlexW4289111224

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.