Evidence map›Paper›PMID 36008591›Full record

ArticleCommunications biology2022

An automated liquid jet for fluorescence dosimetry and microsecond radiolytic labeling of proteins.

Matthew Rosi, Brandon Russell, Line G Kristensen, Erik R Farquhar, Rohit Jain, Donald Abel, Michael Sullivan, Shawn M Costello, Maria Agustina Dominguez-Martin, Yan Chen and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Electrochemical cofactor recycling of bacterial microcompartments.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Electrochemical cofactor recycling of bacterial microcompartments.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Matthew RosiSonoma State University, Rohnert Park, Sonoma, CA, 94928, US.
Brandon RussellSonoma State University, Rohnert Park, Sonoma, CA, 94928, US.
Line G KristensenMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US.
Erik R FarquharCenter for Synchrotron Biosciences, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, US.ORCID 0000-0002-6419-038X
Rohit JainCenter for Synchrotron Biosciences, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, US.ORCID 0000-0002-0780-1869
Donald AbelCenter for Synchrotron Biosciences, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, US.
Michael SullivanCenter for Synchrotron Biosciences, School of Medicine, Case Western Reserve University, Cleveland, OH, 44106, US.
Shawn M CostelloBiophysics Graduate Program, University of California, Berkeley, CA, USA.ORCID 0000-0003-3926-8074
Maria Agustina Dominguez-MartinMSU-DOE Plant Research Laboratory and Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, US.
Yan ChenBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US.
Susan MarquseeDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0001-7648-2163
Christopher J PetzoldBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US.ORCID 0000-0002-8270-5228
Cheryl A KerfeldMSU-DOE Plant Research Laboratory and Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, US.ORCID 0000-0002-9977-8482
Daniel P DePonteStanford Linear Accelerator Center, Menlo Park, CA, 94025, US.
Farid FarahmandSonoma State University, Rohnert Park, Sonoma, CA, 94928, US.
Sayan GuptaMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US. sayangupta@lbl.gov.ORCID 0000-0003-4752-068X
Corie Y RalstonMolecular Foundry Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US. cyralston@lbl.gov.ORCID 0000-0002-7899-0951
Lawrence Berkeley National Laboratory · USCase Western Reserve University · USSonoma State University · USQB3 · USSLAC National Accelerator Laboratory · USUniversity of California, Berkeley · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Jay C. Nix · 2017 to 2026
$28.6M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Sequence and Environmental Determinants of the Protein Energy LandscapeR01GM050945 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARQUSEE, SUSAN · 1999 to 2022
$7.4M
Development of high-dose time-resolved x-ray footprinting technologies to enable the next level of structural analysis for challenging biological problemsR01GM126218 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI RALSTON, CORIE Y · 2018 to 2025
$3.4M
New assay method for pinpointing structural features in amyloid oligomer formationR21AG072478 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI RALSTON, CORIE Y · 2021 to 2021
$559k
NIA NIH HHS R21 AG072478NIBIB NIH HHS P30 EB009998NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM050945NIGMS NIH HHS R01 GM126218
6 · The paper itself

Abstract

X-ray radiolytic labeling uses broadband X-rays for in situ hydroxyl radical labeling to map protein interactions and conformation. High flux density beams are essential to overcome radical scavengers. However, conventional sample delivery environments, such as capillary flow, limit the use of a fully unattenuated focused broadband beam. An alternative is to use a liquid jet, and we have previously demonstrated that use of this form of sample delivery can increase labeling by tenfold at an unfocused X-ray source. Here we report the first use of a liquid jet for automated inline quantitative fluorescence dosage characterization and sample exposure at a high flux density microfocused synchrotron beamline. Our approach enables exposure times in single-digit microseconds while retaining a high level of side-chain labeling. This development significantly boosts the method's overall effectiveness and efficiency, generates high-quality data, and opens up the arena for high throughput and ultrafast time-resolved in situ hydroxyl radical labeling.

Indexed as

Hydroxyl RadicalProteinsFluorescenceSynchrotronsX-RaysHydroxyl RadicalProteins

Identifiers

PMID36008591
PMCPMC9411504
OpenAlexW4293102017

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.