Evidence map›Paper›PMID 36008486›Full record

ArticleNature communications2022

Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginone resistance.

Mark A Tye, N Connor Payne, Catrine Johansson, Kritika Singh, Sofia A Santos, Lọla Fagbami, Akansha Pant, Kayla Sylvester, Madeline R Luth, Sofia Marques and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Structure-Guided Optimization of Novel Inhibitors ofJournal of medicinal chemistry · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. PfApiAT2 is a proline transporter essential for the transmission ofbioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Systematic in vitro evolution inScience (New York, N.Y.) · 2024
    Article
  13. Article
  14. Article
  15. Adaptive evolution: Eukaryotic enzyme's specificity shift to a bacterial substrate.Protein science : a publication of the Protein Society · 2024
    Article
  16. Article
  17. Antimalarial drug discovery: progress and approaches.Nature reviews. Drug discovery · 2023
    Review
  18. iScience · 2023
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Mark A TyeCenter for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0002-9456-0767
N Connor Payne *Center for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0001-9513-6194
Catrine Johansson *Botnar Research Centre, NIHR Oxford Biomedical Research Unit, University of Oxford, Oxford, UK.
Kritika SinghCenter for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.
Sofia A SantosCenter for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.
Lọla FagbamiCenter for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.
Akansha PantHarvard T.H. Chan School of Public Health, Boston, MA, USA.
Kayla SylvesterDepartment of Chemistry, Duke University, Durham, NC, USA.ORCID 0000-0003-4570-7432
Madeline R LuthDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
Sofia MarquesInstituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.
Malcolm WhitmanDepartment of Developmental Biology, Harvard School of Dental Medicine, Boston, MA, USA.
Maria M MotaInstituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.ORCID 0000-0002-2858-1041
Elizabeth A WinzelerDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
Amanda K LukensBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Emily R DerbyshireDepartment of Chemistry, Duke University, Durham, NC, USA.ORCID 0000-0001-6664-8844
Udo OppermannBotnar Research Centre, NIHR Oxford Biomedical Research Unit, University of Oxford, Oxford, UK.
Dyann F WirthHarvard T.H. Chan School of Public Health, Boston, MA, USA.
Ralph MazitschekCenter for Systems Biology, Massachusetts General Hospital, Boston, MA, USA. ralph@broadinstitute.org.ORCID 0000-0002-1105-689X

Funding

Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Defining the resistome in P. falciparum: evolution and mechanismR01AI169892 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Daniel E. Goldberg, Elizabeth A Winzeler · 2023 to 2026
$4.4M
Discovery of long-acting, chemoprotective antimalarial compoundsR01AI152533 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2020 to 2024
$3.5M
Proline homeostasis: a novel mediator of drug tolerance in Plasmodium falciparumR01AI143723 · NIAID · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI MAZITSCHEK, RALPH, WIRTH, DYANN F · 2020 to 2024
$3.4M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Chemogenomic Interrogation of Non-Genetic Drug Resistance in Plasmodium falciparumF31AI129412 · NIAID · HARVARD SCHOOL OF PUBLIC HEALTH · PI FAGBAMI, OLUFUNBI DAMILOLA · 2017 to 2018
$70k
Arthritis Research UK 20522Cancer Research UK A23900NIAID NIH HHS F31 AI129412NIAID NIH HHS R01 AI143723NIAID NIH HHS R01 AI152533NIAID NIH HHS R01 AI169892NIGMS NIH HHS T32 GM008666NIH HHS S10 OD026929Versus Arthritis 20522
6 · The paper itself

Abstract

The development of next-generation antimalarials that are efficacious against the human liver and asexual blood stages is recognized as one of the world's most pressing public health challenges. In recent years, aminoacyl-tRNA synthetases, including prolyl-tRNA synthetase, have emerged as attractive targets for malaria chemotherapy. We describe the development of a single-step biochemical assay for Plasmodium and human prolyl-tRNA synthetases that overcomes critical limitations of existing technologies and enables quantitative inhibitor profiling with high sensitivity and flexibility. Supported by this assay platform and co-crystal structures of representative inhibitor-target complexes, we develop a set of high-affinity prolyl-tRNA synthetase inhibitors, including previously elusive aminoacyl-tRNA synthetase triple-site ligands that simultaneously engage all three substrate-binding pockets. Several compounds exhibit potent dual-stage activity against Plasmodium parasites and display good cellular host selectivity. Our data inform the inhibitor requirements to overcome existing resistance mechanisms and establish a path for rational development of prolyl-tRNA synthetase-targeted anti-malarial therapies.

Indexed as

Amino Acyl-tRNA SynthetasesAntimalarialsPlasmodiumHumansPiperidinesPlasmodium falciparumQuinazolinonesRNA, TransferAmino Acyl-tRNA SynthetasesAntimalarialshalofuginonePiperidinesQuinazolinonesRNA, Transfer

Identifiers

PMID36008486
PMCPMC9403976

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.