Evidence map›Paper›PMID 36007706›Full record

ReviewParasitology international2022

Bulk segregant linkage mapping for rodent and human malaria parasites.

Xue Li, Sudhir Kumar, Katelyn Vendrely Brenneman, Tim J C Anderson

Open access · hybridAbstract readReview
In one paragraph

Review in Parasitology international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genetic crosses within and between species ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Xue LiProgram in Disease Intervention and Prevention, Texas Biomedical Research Institute, San Antonio, TX, USA. Electronic address: xli@txbiomed.org.
Sudhir KumarCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington, USA.
Katelyn Vendrely BrennemanEck Institute for Global Health, Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA.
Tim J C AndersonProgram in Disease Intervention and Prevention, Texas Biomedical Research Institute, San Antonio, TX, USA. Electronic address: tanderso@TxBiomed.org.
Texas Biomedical Research Institute · USInfectious Disease Research Institute · USUniversity of Notre Dame · US

Funding

Systems genetics of artemisinin resistanceP01AI127338 · NIAID · UNIVERSITY OF NOTRE DAME · PI Michael T Ferdig · 2017 to 2026
$21.3M
Mapping Drug Resistance Genes in Plasmodium falciparumR37AI048071 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI ANDERSON, TIM J · 2012 to 2021
$7.9M
NIAID NIH HHS P01 AI127338NIAID NIH HHS R37 AI048071
6 · The paper itself

Abstract

In 2005 Richard Carter's group surprised the malaria genetics community with an elegant approach to rapidly mapping the genetic basis of phenotypic traits in rodent malaria parasites. This approach, which he termed "linkage group selection", utilized bulk pools of progeny, rather than individual clones, and exploited simple selection schemes to identify genome regions underlying resistance to drug treatment (or other phenotypes). This work was the first application of "bulk segregant" methodologies for genetic mapping in microbes: this approach is now widely used in yeast, and across multiple recombining pathogens ranging from Aspergillus fungi to Schistosome parasites. Genetic crosses of human malaria parasites (for which Richard Carter was also a pioneer) can now be conducted in humanized mice, providing new opportunities for exploiting bulk segregant approaches for a wide variety of malaria parasite traits. We review the application of bulk segregant approaches to mapping malaria parasite traits and suggest additional developments that may further expand the utility of this powerful approach.

Indexed as

MalariaParasitesAnimalsChromosome MappingCrosses, GeneticHumansMaleMiceRodentiaBulk segregant analysisGenetic crossesGenotypeLinkage group selectionPhenotype

Identifiers

PMID36007706
PMCPMC11972598
OpenAlexW4292965884

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.