Evidence map›Paper›PMID 36005835›Full record

ArticleMicrobiology spectrum2022

N-Terminus Plays a Critical Role for Stabilizing the Filamentous Assembly and the Antifungal Activity of Bg_9562.

Pankaj Kumar Sahoo, Rahul Kumar, Aruna Rani, Sunil Kumar Yadav, Gopaljee Jha, Deepti Jain

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Pankaj Kumar Sahoo *Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, Haryana, India.
Rahul Kumar *Plant Microbe Interactions Laboratory, National Institute of Plant Genome Researchgrid.419632.b, New Delhi, India.
Aruna Rani *Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, Haryana, India.
Sunil Kumar Yadav *Plant Microbe Interactions Laboratory, National Institute of Plant Genome Researchgrid.419632.b, New Delhi, India.
Gopaljee JhaPlant Microbe Interactions Laboratory, National Institute of Plant Genome Researchgrid.419632.b, New Delhi, India.ORCID 0000-0002-3965-3135
Deepti JainTranscription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, Haryana, India.ORCID 0000-0002-8631-7230
National Institute of Plant Genome Research · INRegional Centre for Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bg_9562, a prophage tail-like protein was earlier shown to be required for bacterial mycophagy by Burkholderia gladioli strain NGJ1. The purified protein exhibited broad-spectrum antifungal activity; however, the structural and mechanistic details vis-à-vis its activity remained elusive. In this study, we have structurally characterized the protein Bg_9562 using negatively stained transmission electron microscopy, molecular modeling and mutagenesis. We find that Bg_9562 shows structural similarity to Gp13, a tail assembly chaperone. The transmission electron microscopy revealed that, Bg_9562 forms long flexible tubular structures. Molecular modeling of the filament like structure divulges that the inter subunit contacts are meditated largely through hydrophobic interactions. Using mutagenesis, we demonstrate that the N-terminal residues of the protein when deleted results in reduced activity and destabilization of filament formation. Overall, structure-function analysis opens up avenues for further utilization of the protein as a potent antifungal molecule.

Indexed as

Antifungal AgentsPlant DiseasesAnimalsHumansAntifungal AgentsantifungalBg_9562mycophagyspiral fiberstail assembly chaperone

Identifiers

PMID36005835
PMCPMC9603447
OpenAlexW4293052003

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.