Evidence map›Paper›PMID 36004362›Full record

ArticleAccess microbiology2022

Analysis of the long-read sequencing data using computational tools confirms the presence of 5-methylcytosine in the

Shruta Sandesh Pai, Saumya Ranjan, Aimee Rachel Mathew, Roy Anindya, Gargi Meur

Open access · goldAbstract read
In one paragraph

Article in Access microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Shruta Sandesh PaiDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy-502284, India.
Saumya RanjanDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy-502284, India.
Aimee Rachel MathewDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy-502284, India.
Roy AnindyaDepartment of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy-502284, India.ORCID https://orcid.org/0000-0001-8561-907X
Gargi MeurNational Institute of Nutrition, Hyderabad-500007, India.
Indian Institute of Technology Hyderabad · INNational Institute of Nutrition · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modification of DNA bases plays important roles in the epigenetic regulation of eukaryotic gene expression. Among the different types of DNA methylation, 5-methylcytosine (5mC) is common in higher eukaryotes. Although bisulfite sequencing is the established detection method for this modification, newer methods, such as Oxford nanopore sequencing, have been developed as quick and reliable alternatives. An earlier study using sensitive liquid chromatography tandem mass spectrometry (LC-MS/MS) indicated the presence of 5mC at very low concentration in

Indexed as

DNA methylationlong-read sequencingNanopore sequencingthird-generation sequencing

Identifiers

PMID36004362
PMCPMC9394670
OpenAlexW4281843939

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.