Evidence map›Paper›PMID 36003902›Full record

ArticleFrontiers in cardiovascular medicine2022

PlaqView 2.0: A comprehensive web portal for cardiovascular single-cell genomics.

Wei Feng Ma, Adam W Turner, Christina Gancayco, Doris Wong, Yipei Song, Jose Verdezoto Mosquera, Gaëlle Auguste, Chani J Hodonsky, Ajay Prabhakar, H Atakan Ekiz and 2 more

Abstract read
In one paragraph

Article in Frontiers in cardiovascular medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Circulation research · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Spatial Metabolomics and the Vulnerable Atherosclerotic Plaque.Arteriosclerosis, thrombosis, and vascular biology · 2023
    Article
  12. Uncovering Protein Networks in Cardiovascular Proteomics.Molecular & cellular proteomics : MCP · 2023
    Review
  13. Dipeptidyl Peptidase 4/Midline-1 Axis Promotes T Lymphocyte Motility in Atherosclerosis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Wei Feng MaMedical Scientist Training Program, University of Virginia, Charlottesville, VA, United States.
Adam W TurnerCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
Christina GancaycoResearch Computing, University of Virginia, Charlottesville, VA, United States.
Doris WongCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
Yipei SongCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
Jose Verdezoto MosqueraCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
Gaëlle AugusteCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
Chani J HodonskyCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
Ajay PrabhakarCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.
H Atakan EkizDepartment of Molecular Biology and Genetics, Izmir Institute of Technology, Gülbahçe, Turkey.
Sander W van der LaanCentral Diagnostics Laboratory, Division Laboratories, Pharmacy, and Biomedical Genetics, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Clint L MillerCenter for Public Health Genomics, University of Virginia, Charlottesville, VA, United States.

Funding

EPISTATIC REGULATORY MECHANISMS OF CORONARY HEART DISEASE RISKR00HL125912 · NHLBI · UNIVERSITY OF VIRGINIA · PI MILLER, CLINT L · 2017 to 2019
$747k
NHLBI NIH HHS R00 HL125912
6 · The paper itself

Abstract

Single-cell RNA-seq (scRNA-seq) is a powerful genomics technology to interrogate the cellular composition and behaviors of complex systems. While the number of scRNA-seq datasets and available computational analysis tools have grown exponentially, there are limited systematic data sharing strategies to allow rapid exploration and re-analysis of single-cell datasets, particularly in the cardiovascular field. We previously introduced PlaqView, an open-source web portal for the exploration and analysis of published atherosclerosis single-cell datasets. Now, we introduce PlaqView 2.0 (www.plaqview.com), which provides expanded features and functionalities as well as additional cardiovascular single-cell datasets. We showcase improved PlaqView functionality, backend data processing, user-interface, and capacity. PlaqView brings new or improved tools to explore scRNA-seq data, including gene query, metadata browser, cell identity prediction,

Indexed as

cardiovasculardatabasegenomicsscRNA-seqsingle-cellweb portal

Identifiers

PMID36003902
PMCPMC9393487

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.