Evidence map›Paper›PMID 36003356›Full record

ArticleAccess microbiology2022

A comparison of SARS-CoV-2 RNA extraction with the QuickGene-810 Nucleic Acid Isolation System compared to the EZ1 Advanced DSP Virus Kit.

Thuy Phan, Rebecca Stephenson, Tina Cai, Nikol Andacic, Genevieve McKew

Open access · goldAbstract read
In one paragraph

Article in Access microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Thuy PhanNSW Health Pathology, Department of Microbiology and Infectious Diseases, Concord Repatriation and General Hospital, Hospital Rd, Concord, NSW 2139, Australia.
Rebecca StephensonNSW Health Pathology, Department of Microbiology and Infectious Diseases, Concord Repatriation and General Hospital, Hospital Rd, Concord, NSW 2139, Australia.
Tina CaiNSW Health Pathology, Department of Microbiology and Infectious Diseases, Concord Repatriation and General Hospital, Hospital Rd, Concord, NSW 2139, Australia.
Nikol AndacicNSW Health Pathology, Department of Microbiology and Infectious Diseases, Concord Repatriation and General Hospital, Hospital Rd, Concord, NSW 2139, Australia.
Genevieve McKewNSW Health Pathology, Department of Microbiology and Infectious Diseases, Concord Repatriation and General Hospital, Hospital Rd, Concord, NSW 2139, Australia.ORCID https://orcid.org/0000-0002-5238-9260
Concord Repatriation General Hospital · AUThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The QuickGene-810 Nucleic Acid Isolation System is a semi-automated extraction platform which may be used for RNA extraction. New methods were required to support the rapid increase in respiratory virus testing during the SARS-CoV-2 pandemic. The aim of this study was to assess SARS-CoV-2 RNA extraction using the QuickGene-810 kit compared to the EZ1 Advanced Extraction Platform for use on the AusDiagnostics SARS-CoV-2, Influenza and RSV 8-well RT-PCR assay. Qualitative results from all clinical samples were concordant between the QuickGene-810 and the EZ1 extraction methods, demonstrating that the QuickGene-810 kit is suitable for use in pathogen diagnostics. However, there was an average difference of approximately two cycles between the cycle threshold (Ct) values for both SARS-CoV-2 targets, suggesting that the EZ1 kit yields a higher concentration of nucleic acid extract, possibly related to its use of carrier RNA and/or smaller elution volume, which infers the possibility of false negative results for samples with very low viral loads.

Indexed as

QuickGene-810RNA extractionSARS-CoV-2

Identifiers

PMID36003356
PMCPMC9394536
OpenAlexW4281625585

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.