Evidence map›Paper›PMID 36002889›Full record

ArticleJournal of experimental & clinical cancer research : CR2022

Identification of novel early pancreatic cancer biomarkers KIF5B and SFRP2 from "first contact" interactions in the tumor microenvironment.

Harrys Kishore Charles Jacob, Rossana Signorelli, John Lalith Charles Richard, Tyler Kashuv, Shweta Lavania, Ashley Middleton, Beatriz Aguilar Gomez, Anthony Ferrantella, Haleh Amirian, Junyi Tao and 9 more

Open access · goldAbstract read
In one paragraph

Article in Journal of experimental & clinical cancer research : CR, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Article
  10. Proteomics in pancreatic cancer.Biomarker research · 2025
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Functional and Clinical Proteomic Exploration of Pancreatic Cancer.Molecular & cellular proteomics : MCP · 2023
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Harrys Kishore Charles JacobDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA. harryskcjacob@miami.edu.ORCID http://orcid.org/0000-0003-3030-2539
Rossana SignorelliDepartment of Biology, University of Miami, Miami, USA.
John Lalith Charles RichardInstitute of Engineering in Medicine, University of California San Diego, San Diego, USA.ORCID http://orcid.org/0000-0002-1186-6390
Tyler KashuvDepartment of Biochemistry and Molecular Biology, University of Miami, Miami, USA.
Shweta LavaniaDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.
Ashley MiddletonDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.
Beatriz Aguilar GomezDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.
Anthony FerrantellaDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.
Haleh AmirianDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.
Junyi TaoDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.ORCID http://orcid.org/0000-0003-2638-5386
Ayse Burcu ErgonulBiospecimen Shared Resource, University of Miami, Miami, USA.
Melinda Minucci BooneBiospecimen Shared Resource, University of Miami, Miami, USA.
Marco HadisuryaDepartment of Biochemistry, Purdue University, West Lafayette, USA.
Weiguo Andy TaoDepartment of Biochemistry, Purdue University, West Lafayette, USA.
Anton IliukTymora Analytical Operations, Innovations, West Lafayette, USA.
Manoj Kumar KashyapAmity Stem Cell Institute, Amity Medical School, Amity University, Haryana, India.
Monica Garcia-BuitragoSylvester Comprehensive Cancer Center, Cancer Modeling Shared Resource, University of Miami, Miller School of Medicine, Miami, USA.
Rajinder DawraDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA.
Ashok Kumar SalujaDepartment of Surgery, University of Miami, Miller School of Medicine, Miami, USA. asaluja@miami.edu.
University of Miami · USPurdue University West Lafayette · USTymora Analytical Operations (United States) · USUniversity of California San Diego · US

Funding

Development of non-invasive biomarker discovery and diagnostics approach for bladder cancer based on urine proteome and phosphoproteomeR44CA239845 · NCI · TYMORA ANALYTICAL OPERATIONS, LLC · PI ILIUK, ANTON · 2019 to 2021
$1.5M
NCI NIH HHS R44 CA239845
6 · The paper itself

Abstract

backgroundPancreatic cancer is one of the most difficult cancers to detect early and most patients die from complications arising due to distant organ metastases. The lack of bona fide early biomarkers is one of the primary reasons for late diagnosis of pancreatic cancer. It is a multifactorial disease and warrants a novel approach to identify early biomarkers.

methodsIn order to characterize the proteome, Extracellular vesicles (EVs) isolated from different in vitro conditions mimicking tumor-microenvironment interactions between pancreatic cancer epithelial and stromal cells were analyzed using high throughput mass spectrometry. The biological activity of the secreted EVome was analyzed by investigating changes in distant organ metastases and associated early changes in the microbiome. Candidate biomarkers (KIF5B, SFRP2, LOXL2, and MMP3) were selected and validated on a mouse-human hybrid Tissue Microarray (TMA) that was specifically generated for this study. Additionally, a human TMA was used to analyze the expression of KIF5B and SFRP2 in progressive stages of pancreatic cancer.

resultsThe EVome of co-cultured epithelial and stromal cells is different from individual cells with distinct protein compositions. EVs secreted from stromal and cancer cells cultures could not induce significant changes in Pre-Metastatic Niche (PMN) modulation, which was assessed by changes in the distant organ metastases. However, they did induce significant changes in the early microbiome, as indicated by differences in α and β-diversities. KIF5B and SFRP2 show promise for early detection and investigation in progressive pancreatic cancer. These markers are expressed in all stages of pancreatic cancer such as low grade PanINs, advanced cancer, and in liver and soft tissue metastases.

conclusionsProteomic characterization of EVs derived from mimicking conditions of epithelial and stromal cells in the tumor-microenvironment resulted in the identification of several proteins, some for the first time in EVs. These secreted EVs cannot induce changes in distant organ metastases in in vivo models of EV education, but modulate changes in the early murine microbiome. Among all the proteins that were analyzed (MMP3, KIF5B, SFRP2, and LOXL2), KIF5B and SFRP2 show promise as bona fide early pancreatic cancer biomarkers expressed in progressive stages of pancreatic cancer.

Indexed as

KinesinsMembrane ProteinsPancreatic NeoplasmsTumor MicroenvironmentAnimalsBiomarkers, TumorHumansMatrix Metalloproteinase 3MiceProteomeProteomicsSecreted Frizzled-Related ProteinsBiomarkers, TumorKIF5B protein, humanKif5b protein, mouseKinesinsMatrix Metalloproteinase 3Membrane ProteinsProteomeSecreted Frizzled-Related ProteinsSFRP2 protein, humanSfrp2 protein, mouseEVtrapExtracellular VesiclesHybrid TMAKIF5BLOXL2MicrobiomeMMP3Pancreatic CancerPDAC progressionPre-Metastatic NicheProteomicsSFRP2Tumor-Microenvironment

Identifiers

PMID36002889
PMCPMC9400270
OpenAlexW4293103120

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.