Evidence map›Paper›PMID 36002444›Full record

ArticleScientific data2022

qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data.

Agah Karakuzu, Stefan Appelhoff, Tibor Auer, Mathieu Boudreau, Franklin Feingold, Ali R Khan, Alberto Lazari, Chris Markiewicz, Martijn Mulder, Christophe Phillips and 4 more

Abstract readMulticenter Study
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Reproducible Research Practices in Magnetic Resonance Neuroimaging: A Review Informed by Advanced Language Models.Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2024
    Review
  12. Reproducible Spinal Cord Quantitative MRI Analysis with the Spinal Cord Toolbox.Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. The relaxometry hype cycle.Frontiers in physiology · 2023
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Agah KarakuzuNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montréal, QC, Canada. agahkarakuzu@gmail.com.ORCID 0000-0001-7283-271X
Stefan AppelhoffCenter for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany.ORCID 0000-0001-8002-0877
Tibor AuerNeuroModulation Lab, School of Psychology, University of Surrey, Guildford, UK.ORCID 0000-0001-5153-1424
Mathieu BoudreauNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montréal, QC, Canada.
Franklin FeingoldStanford University, Stanford, CA, USA.ORCID 0000-0002-6533-2909
Ali R KhanDepartment of Medical Biophysics, Robarts Research Institute, University of Western Ontario, London, Canada.ORCID 0000-0002-0760-8647
Alberto LazariWellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.ORCID 0000-0002-8688-581X
Chris MarkiewiczStanford University, Stanford, CA, USA.ORCID 0000-0002-6533-164X
Martijn MulderDepartment of Experimental Psychology, Utrecht University, Utrecht, the Netherlands.
Christophe PhillipsGIGA Cyclotron Research Centre in vivo imaging, GIGA Institute, University of Liège, Liège, Belgium.ORCID 0000-0002-4990-425X
Taylor SaloFlorida International University, Miami, FL, USA.ORCID 0000-0001-9813-3167
Nikola StikovNeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montréal, QC, Canada.
Kirstie WhitakerThe Alan Turing Institute, London, UK. kwhitaker@turing.ac.uk.ORCID 0000-0001-8498-4059
Gilles de HollanderZurich Center for Neuroeconomics (ZNE), Department of Economics, University of Zurich, Zurich, Switzerland. gilles.de.hollander@gmail.com.

Funding

Canada First Research Excellence Fund (Fonds d'excellence en recherche Apogée Canada) TransMedTechRCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/S008314/1Wellcome TrustWellcome Trust (Wellcome) 109062/Z/15/Z
6 · The paper itself

Abstract

The Brain Imaging Data Structure (BIDS) established community consensus on the organization of data and metadata for several neuroimaging modalities. Traditionally, BIDS had a strong focus on functional magnetic resonance imaging (MRI) datasets and lacked guidance on how to store multimodal structural MRI datasets. Here, we present and describe the BIDS Extension Proposal 001 (BEP001), which adds a range of quantitative MRI (qMRI) applications to the BIDS. In general, the aim of qMRI is to characterize brain microstructure by quantifying the physical MR parameters of the tissue via computational, biophysical models. By proposing this new standard, we envision standardization of qMRI through multicenter dissemination of interoperable datasets. This way, BIDS can act as a catalyst of convergence between qMRI methods development and application-driven neuroimaging studies that can help develop quantitative biomarkers for neural tissue characterization. In conclusion, this BIDS extension offers a common ground for developers to exchange novel imaging data and tools, reducing the entrance barrier for qMRI in the field of neuroimaging.

Indexed as

BrainMagnetic Resonance ImagingBiomarkersNeuroimagingBiomarkers

Identifiers

PMID36002444
PMCPMC9402561

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.