Evidence map›Paper›PMID 36000841›Full record

ArticleJournal of virology2022

Exploitation of a Bacterium-Encoded Lytic Transglycosylase by a Human Oral Lytic Phage To Facilitate Infection.

Lujia Cen, Yunjie Chang, Joseph K Bedree, Yansong Ma, Qiu Zhong, Daniel R Utter, Pu-Ting Dong, Renate Lux, Batbileg Bor, Jun Liu and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Identifying essential genes inJournal of bacteriology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Three's a crowd: Saccharibacteria episymbiosis modulates phage predation of host bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Lujia CenDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA.
Yunjie ChangMicrobial Sciences Institute, Yale University, New Haven, Connecticut, USA.
Joseph K BedreeDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA.
Yansong MaCapital University of Medicine, Beijing, China.
Qiu ZhongDepartment of Microbiology, Army Medical University, Chongqing, China.
Daniel R UtterDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA.
Pu-Ting DongDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA.
Renate LuxSection of Biosystems and Function, UCLA School of Dentistry, Los Angeles, California, USA.
Batbileg BorDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA.ORCID 0000-0002-1797-1730
Jun LiuMicrobial Sciences Institute, Yale University, New Haven, Connecticut, USA.ORCID 0000-0003-3108-6735
Jeffrey S McLeanDepartment of Periodontics, University of Washingtongrid.34477.33, Seattle, Washington, USA.ORCID 0000-0001-9934-5137
Shuai LeDepartment of Microbiology, Army Medical University, Chongqing, China.ORCID 0000-0003-3748-5454
Xuesong HeDepartment of Microbiology, The Forsyth Institute, Cambridge, Massachusetts, USA.ORCID 0000-0002-3333-9188
Army Medical University · CNHarvard University · USYale University · USCalifornia Institute of Technology · USUniversity of California, Los Angeles · USUniversity of Washington · US

Funding

Structure-Function Relationships in the Spirochetal Flagellar MotorR01AI087946 · NIAID · YALE UNIVERSITY · PI LIU, JUN · 2010 to 2025
$6.6M
Domestication and characterization of TM7-the most elusive oral phylumR01DE023810 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Xuesong He, Jeffrey Scott McLean · 2014 to 2026
$6.6M
Delineation of unique flagellar proteins in spirochetesR01AI132818 · NIAID · EAST CAROLINA UNIVERSITY · PI Jun Liu, MD A MOTALEB · 2018 to 2026
$3.3M
Structural basis of phage infection and DNA ejectionR01GM110243 · NIGMS · YALE UNIVERSITY · PI LIU, JUN, MOLINEUX, IAN J · 2014 to 2024
$3.1M
Impact of Saccharibacteria and their bacterial hosts in Periodontal and Inflammatory DiseasesR01DE031274 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI Batbileg Bor · 2022 to 2026
$2.5M
Host tRNA-derived small RNAs (tsRNAs) mediate interactions between host and oral microbesR01DE030943 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI Xuesong He · 2022 to 2026
$2.4M
High-throughput electron cryo-microscopeS10OD023603 · OD · YALE UNIVERSITY · PI SIGWORTH, FREDERICK J · 2018 to 2018
$1.9M
Shedding Light on Microbial Dark MatterF31DE026057 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BEDREE, JOSEPH KERNAN · 2016 to 2020
$156k
NIAID NIH HHS R01 AI087946NIAID NIH HHS R01 AI132818NIDCR NIH HHS F31 DE026057NIDCR NIH HHS R01 DE023810NIDCR NIH HHS R01 DE030943NIDCR NIH HHS R01 DE031274NIGMS NIH HHS R01 GM110243NIH HHS S10 OD023603
6 · The paper itself

Abstract

Bacteriophages (phages) are an integral part of the human oral microbiome. Their roles in modulating bacterial physiology and shaping microbial communities have been discussed but remain understudied due to limited isolation and characterization of oral phage. Here, we report the isolation of LC001, a lytic phage targeting human oral Schaalia odontolytica (formerly known as Actinomyces odontolyticus) strain XH001. We showed that LC001 attached to and infected surface-grown, but not planktonic, XH001 cells, and it displayed remarkable host specificity at the strain level. Whole-genome sequencing of spontaneous LC001-resistant, surface-grown XH001 mutants revealed that the majority of the mutants carry nonsense or frameshift mutations in XH001 gene

Indexed as

ActinomycetaceaeBacteriophagesGlycosyltransferasesBacteriophage ReceptorsHost SpecificityHumansMicrobiotaMouthMutationPeptidoglycanPlanktonViral ProteinsBacteriophage ReceptorsGlycosyltransferasesPeptidoglycanViral Proteinsbacterial phage interactionlytic transglycosylaseoral lytic phageoral microbiome

Identifiers

PMID36000841
PMCPMC9472602
OpenAlexW4293212449

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.