Evidence map›Paper›PMID 36000409›Full record

ArticleJournal of cell science2022

Conserved Pib2 regions have distinct roles in TORC1 regulation at the vacuole.

Kayla K Troutman, Natalia V Varlakhanova, Bryan A Tornabene, Rajesh Ramachandran, Marijn G J Ford

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kayla K TroutmanDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.ORCID 0000-0002-3765-1996
Natalia V VarlakhanovaDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.ORCID 0000-0002-9776-4423
Bryan A TornabeneDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.ORCID 0000-0002-6879-7787
Rajesh RamachandranDepartment of Physiology & Biophysics, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.ORCID 0000-0002-4645-2841
Marijn G J FordDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.ORCID 0000-0002-9115-4413
University of Pittsburgh · USUniversity School · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHRISTOPHER J. BAKKENIST · 1988 to 2026
$158.0M
MOLECULAR MECHANISMS OF DYNAMIN-RELATED PROTEIN 1-MEDIATED MITOCHONDRIAL FISSIONR01GM121583 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI RAMACHANDRAN, RAJESH · 2017 to 2021
$1.8M
Interinstitutional Program in Cell and Molecular Biology: A Graduate Training Path to Promote Traditional and Non-Traditional Professional OutcomesT32GM133353 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BRODSKY, JEFFREY L., MURRAY, SANDRA ANN · 2020 to 2024
$1.5M
Regulation of membrane remodeling by the SNX-BAR protein familyR35GM139546 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FORD, MARIJN GERARD JOHANNES · 2021 to 2021
$511k
A low volume isothermal titration calorimeter for structure-function studies of biological macromoleculesS10OD023481 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2017 to 2017
$127k
NCI NIH HHS P30 CA047904NIGMS NIH HHS R01 GM121583NIGMS NIH HHS R35 GM139546NIGMS NIH HHS T32 GM133353NIH HHS S10 OD023481University of Pittsburgh
6 · The paper itself

Abstract

TORC1 is a critical controller of cell growth in eukaryotes. In yeast (Saccharomyces cerevisiae), the presence of nutrients is signaled to TORC1 by several upstream regulatory sensors that together coordinate TORC1 activity. TORC1 localizes to both vacuolar and endosomal membranes, where differential signaling occurs. This localization is mimicked by Pib2, a key upstream TORC1 regulator that is essential for TORC1 reactivation after nutrient starvation or pharmacological inhibition. Pib2 has both positive and negative effects on TORC1 activity, but the mechanisms remain poorly understood. Here, we pinpoint the Pib2 inhibitory function on TORC1 to residues within short, conserved N-terminal regions. We also show that the Pib2 C-terminal regions, helical region E and tail, are essential for TORC1 reactivation. Furthermore, the Pib2 FYVE domain plays a role in vacuolar localization, but it is surprisingly unnecessary for recovery from rapamycin exposure. Using chimeric Pib2 targeting constructs, we show that endosomal localization is not necessary for TORC1 reactivation and cell growth after rapamycin treatment. Thus, a comprehensive molecular dissection of Pib2 demonstrates that each of its conserved regions differentially contribute to Pib2-mediated regulation of TORC1 activity.

Indexed as

Saccharomyces cerevisiae ProteinsVacuolesApoptosis Regulatory ProteinsMechanistic Target of Rapamycin Complex 1Saccharomyces cerevisiaeSirolimusApoptosis Regulatory ProteinsMechanistic Target of Rapamycin Complex 1Pib2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSirolimusFYVEPib2RapamycinTORC1

Identifiers

PMID36000409
PMCPMC9584352
OpenAlexW4293171180

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.