Evidence map›Paper›PMID 35999576›Full record

ArticleParasites & vectors2022

RNA sequencing reveals dynamic expression of lncRNAs and mRNAs in caprine endometrial epithelial cells induced by Neospora caninum infection.

Shan-Shan Zhao, De-Liang Tao, Jin-Ming Chen, Jiang-Ping Wu, Xin Yang, Jun-Ke Song, Xing-Quan Zhu, Guang-Hui Zhao

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shan-Shan ZhaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
De-Liang TaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jin-Ming ChenCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jiang-Ping WuCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xin YangCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Jun-Ke SongCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xing-Quan ZhuCollege of Veterinary Medicine, Shanxi Agricultural University, Taigu, 030801, Shanxi, China. xingquanzhu1@hotmail.com.
Guang-Hui ZhaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China. zgh083@nwsuaf.edu.cn.
Northwest A&F University · CNYunnan Agricultural University · CN

Funding

the Fund for Shanxi "1331 Project" Grant No. 20211331-13the Innovation Support Plan of Shaanxi Province Grant No. 2021TD-31the Key Research and Development Program of Shaanxi Province Grant No. 2022NY-097the Special Research Fund of Shanxi Agricultural University for High-level Talents 2021XG001Yunnan Expert Workstation Yunnan Expert Workstation
6 · The paper itself

Abstract

backgroundThe effective transmission mode of Neospora caninum, with infection leading to reproductive failure in ruminants, is vertical transmission. The uterus is an important reproductive organ that forms the maternal-fetal interface. Neospora caninum can successfully invade and proliferate in the uterus, but the molecular mechanisms underlying epithelial-pathogen interactions remain unclear. Accumulating evidence suggests that host long noncoding RNAs (lncRNAs) play important roles in cellular molecular regulatory networks, with reports that these RNA molecules are closely related to the pathogenesis of apicomplexan parasites. However, the expression profiles of host lncRNAs during N. caninum infection has not been reported.

methodsRNA sequencing (RNA-seq) analysis was used to investigate the expression profiles of messenger RNAs (mRNAs) and lncRNAs in caprine endometrial epithelial cells (EECs) infected with N. caninum for 24 h (TZ_24h) and 48 h (TZ_48 h), and the potential functions of differentially expressed (DE) lncRNAs were predicted by using Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of their mRNA targets.

resultsRNA-seq analysis identified 1280.15 M clean reads in 12 RNA samples, including six samples infected with N. caninum for 24 h (TZ1_24h-TZ3_24h) and 48 h (TZ1_48h-TZ3_48h), and six corresponding control samples (C1_24h-C3_24h and C1_48h-C3_48h). Within the categories TZ_24h-vs-C_24h, TZ_48h-vs-C_48h and TZ_48h-vs-TZ_24h, there were 934 (665 upregulated and 269 downregulated), 1238 (785 upregulated and 453 downregulated) and 489 (252 upregulated and 237 downregulated) DEmRNAs, respectively. GO enrichment and KEGG analysis revealed that these DEmRNAs were mainly involved in the regulation of host immune response (e.g. TNF signaling pathway, MAPK signaling pathway, transforming growth factor beta signaling pathway, AMPK signaling pathway, Toll-like receptor signaling pathway, NOD-like receptor signaling pathway), signaling molecules and interaction (e.g. cytokine-cytokine receptor interaction, cell adhesion molecules and ECM-receptor interaction). A total of 88 (59 upregulated and 29 downregulated), 129 (80 upregulated and 49 downregulated) and 32 (20 upregulated and 12 downregulated) DElncRNAs were found within the categories TZ_24h-vs-C_24h, TZ_48h-vs-C_48h and TZ_48h-vs-TZ_24h, respectively. Functional prediction indicated that these DElncRNAs would be involved in signal transduction (e.g. MAPK signaling pathway, PPAR signaling pathway, ErbB signaling pathway, calcium signaling pathway), neural transmission (e.g. GABAergic synapse, serotonergic synapse, cholinergic synapse), metabolism processes (e.g. glycosphingolipid biosynthesis-lacto and neolacto series, glycosaminoglycan biosynthesis-heparan sulfate/heparin) and signaling molecules and interaction (e.g. cytokine-cytokine receptor interaction, cell adhesion molecules and ECM-receptor interaction).

conclusionsThis is the first investigation of global gene expression profiles of lncRNAs during N. caninum infection. The results provide valuable information for further studies of the roles of lncRNAs during N. caninum infection.

Indexed as

CoccidiosisNeosporaRNA, Long NoncodingAnimalsCytokinesEpithelial CellsFemaleGene Expression ProfilingGoatsHumansReceptors, CytokineRNA, MessengerSequence Analysis, RNACytokinesReceptors, CytokineRNA, Long NoncodingRNA, MessengerCaprine endometrial epithelial cellsExpressed profilesLncRNAsmRNAsNeospora caninum

Identifiers

PMID35999576
PMCPMC9398501
OpenAlexW4293024974

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.