Evidence map›Paper›PMID 35999328›Full record

ArticleArchives of virology2022

Genetic diversity and molecular evolution of sugarcane mosaic virus, comparing whole genome and coat protein sequence phylogenies.

Khalid Muhammad, Venura Herath, Khadija Ahmed, Muhammad Tahir, Jeanmarie Verchot

Open access · hybridAbstract read
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Development of an immunodiagnostic assay for the detection ofTurkish journal of biology = Turk biyoloji dergisi · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Khalid MuhammadAtta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology, Islamabad, Pakistan.
Venura HerathDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, 77843, USA.ORCID http://orcid.org/0000-0003-2977-2787
Khadija AhmedAtta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology, Islamabad, Pakistan.
Muhammad TahirAtta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology, Islamabad, Pakistan.ORCID http://orcid.org/0000-0002-4025-852X
Jeanmarie VerchotDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, 77843, USA. Jeanmarie.verchot@ag.tamu.edu.ORCID http://orcid.org/0000-0001-8789-3144
National University of Sciences and Technology · PKTexas A&M University · USUniversity of Peradeniya · LK

Funding

Directorate for Biological Sciences Directorate for Biological SciencesOffice of the Higher Education Commission NRPU5968Office of the Higher Education Commission Office of the Higher Education Commission
6 · The paper itself

Abstract

Sugarcane mosaic virus (SCMV) is a widely distributed potyvirus that causes mosaic disease in sugarcane, maize, sorghum, canna, and other monocot species worldwide. This study used 139 SCMV full-length genome sequences to analyze the phylogenetic relatedness of geographically distinct isolates. The phylogenetic analysis revealed four major groups of SCMV isolates that relate to their primary host. The geographic locations for some isolates appear to be mismatched within the tree, suggesting either that convergent molecular evolution has occurred or that the tree reconstruction produces statistically significant incongruences that create uncertainty in the true evolutionary relationships of these virus isolates. Recombination analysis showed hot spots across most of the genome except in the coat protein (CP) coding region. We examined 161 SCMV CP sequences from the GenBank database, including sequences from samples collected in Pakistan, a region that has not been included in prior phylogenetic studies. These data suggest that the SCMV isolates from sugarcane (Saccharum officinarum) predate isolates from all other hosts, regardless of their geographic origins.

Indexed as

PotyvirusSaccharumEvolution, MolecularGenetic VariationPhylogenyPlant DiseasesZea mays

Identifiers

PMID35999328
PMCPMC9556425
OpenAlexW4293089441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.