Evidence map›Paper›PMID 35997500›Full record

ArticleJournal of clinical microbiology2022

Matrix Matters: Assessment of Commutability among BK Virus Assays and Standards.

R T Hayden, Y Su, J Boonyaratanakornkit, L Cook, Z Gu, K R Jerome, B A Pinsky, S S Sam, S K Tan, H Zhu and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

R T HaydenDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID 0000-0002-3073-4115
Y SuDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
J BoonyaratanakornkitBio-Rad Laboratories, Hercules, California, USA.
L CookDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, USA.ORCID 0000-0002-2049-6598
Z GuDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
K R JeromeDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, USA.
B A PinskyDepartment of Pathology, Stanford University School of Medicinegrid.471392.a, Stanford, California, USA.ORCID 0000-0001-8751-4810
S S SamDivision of Infectious Diseases, Warren Alpert Medical School of Brown University, Providence, Rhode Island, USA.
S K TanDepartment of Pathology, Stanford University School of Medicinegrid.471392.a, Stanford, California, USA.ORCID 0000-0001-5835-8660
H ZhuDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
L TangDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
A M CaliendoDivision of Infectious Diseases, Warren Alpert Medical School of Brown University, Providence, Rhode Island, USA.
St. Jude Children's Research Hospital · USBrown University · USStanford University · USUniversity of Washington · USBio-Rad (United States) · US

Funding

Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI LARRY K BROWN · 1998 to 2026
$51.7M
NIAID NIH HHS P30 AI042853
6 · The paper itself

Abstract

Quantitative testing of BK virus (BKPyV) nucleic acid has become the standard of care in transplant patients. While the relationship between interassay harmonization and commutability has been well characterized for other transplant-related viruses, it has been less well studied for BKPyV, particularly regarding differences in commutability between matrices. Here, interassay agreement was evaluated among six real-time nucleic acid amplification tests (NAATs) and one digital PCR (dPCR) BKPyV assay. Differences in the commutability of three quantitative standards was examined across all assays using a variety of statistical approaches. Panels, including 40 samples each of plasma and urine samples previously positive for BKPyV, together with one previously negative plasma sample and four previously negative urine samples, were tested using all assays, with each real-time NAAT utilizing its usual quantitative calibrators. Serial dilutions of WHO, National Institute for Standards and Technology (NIST), and commercially produced (Exact/Bio-Rad) reference materials were also run by each assay as unknowns. The agreement of the clinical sample values was assessed as a group and in a pairwise manner. The commutability was estimated using both relativistic and quantitative means. The quantitative agreement across assays in the urine samples was within a single log

Indexed as

BK VirusNucleic AcidsCytomegalovirusHumansReference StandardsViral LoadNucleic AcidsBK viruscommutabilitydigital PCRquantitative PCRreal-time PCRstandardizationviral load

Identifiers

PMID35997500
PMCPMC9491175
OpenAlexW4292722565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.