ArticleBiotech (Basel (Switzerland))2022
Development of SSR Markers Linked to Stress Responsive Genes along Tomato Chromosome 3 (
Article in Biotech (Basel (Switzerland)), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 14 citations in OpenAlex.
- Dehydration Stress Memory Genes in Tomato (International journal of molecular sciences · 2026Article
- Abiotic stress-responsive transcription factor derived-SSR markers reveal conserved regulatory genes and genetic structure in two cultivated jute species.BMC plant biology · 2026Article
- Integrating combining ability and multivariate analysis for the selection of superior tomato hybrids.Frontiers in plant science · 2026Article
- Long-Term Salinity-Responsive Transcriptome in Advanced Breeding Lines of Tomato.Plants (Basel, Switzerland) · 2025Article
- Streamlining of Simple Sequence Repeat Data Mining Methodologies and Pipelines for Crop Scanning.Plants (Basel, Switzerland) · 2024Review
- Characterization of Lithuanian Tomato Varieties and Hybrids Using Phenotypic Traits and Molecular Markers.Plants (Basel, Switzerland) · 2024Article
- Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant's Abiotic Stress Tolerance Responses.Genes · 2023Review
- Molecular Characterization of Dehydrin in Azraq Saltbush among RelatedBiotech (Basel (Switzerland)) · 2023Article
- Development of Diagnostic Markers and Applied for Genetic Diversity Study and Population Structure ofJournal of fungi (Basel, Switzerland) · 2023Article
- Comparative genomics analysis of endangered wild EgyptianFrontiers in genetics · 2023Article
Corrections and comments
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Authors and funding
7 authors at 4 institutions in 1 country.
Funding
Abstract
This study aimed to develop novel SSR markers in tomato. Several BAC clones along chromosome 3 in tomato were selected based on their content. The criteria was the availability of genes, either directly or indirectly related to stress response (drought, salinity, and heat) in tomato. A total of 20 novel in silico SSR markers were developed and 96 important nearby genes were identified. The identified nearby genes represent different tomato genes involved in plant growth and development and biotic and abiotic stress tolerance. The developed SSR markers were assessed using tomato landraces. A total of 29 determinate and semi-determinate local tomato landraces collected from diverse environments were utilized. A total of 33 alleles with mean of 1.65 alleles per locus were scored, showing 100% polymorphic patterns, with a mean of 0.18 polymorphism information content (PIC) values. The mean of observed and expected heterozygosity were 0.19 and 0.24, respectively. The mean value of the Jaccard similarity index was used for clustering the landraces. The developed microsatellite markers showed potential to assess genetic variability among tomato landraces. The genetic distance information reported in this study can be used by breeders in future genetic improvement of tomato for tolerance against diverse stresses.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.