Evidence map›Paper›PMID 35996001›Full record

ArticleNature chemical biology2022

Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis.

Yu Imai, Glenn Hauk, Jeffrey Quigley, Libang Liang, Sangkeun Son, Meghan Ghiglieri, Michael F Gates, Madeleine Morrissette, Negar Shahsavari, Samantha Niles and 6 more

Erratum issuedAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A chlorinated diketopiperazine antibiotic targetsAntimicrobial agents and chemotherapy · 2025
    Article
  8. Article
  9. Structural Mechanisms of Topoisomerase-Targeting Drugs.Annual review of biochemistry · 2025
    Review
  10. Article
  11. Review
  12. Fighting Antimicrobial Resistance: Innovative Drugs in Antibacterial Research.Angewandte Chemie (International ed. in English) · 2025
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Yu Imai *Antimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Glenn Hauk *Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID http://orcid.org/0000-0003-4325-7335
Jeffrey QuigleyAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Libang LiangAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Sangkeun SonAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Meghan GhiglieriAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Michael F GatesAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Madeleine MorrissetteAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Negar ShahsavariAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Samantha NilesAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA.
Donna BaldisseriBruker Biospin Corporation, Billerica, MA, USA.
Chandrashekhar HonraoCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Xiaoyu MaCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Jason J GuoCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
James M BergerDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA. jmberger@jhmi.edu.ORCID http://orcid.org/0000-0003-0666-1240
Kim LewisAntimicrobial Discovery Center, Department of Biology, Northeastern University, Boston, MA, USA. k.lewis@northeastern.edu.ORCID http://orcid.org/0000-0002-1621-7664

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
Uncultured bacteria for the discovery of novel antimicrobialsP01AI118687 · NIAID · NORTHEASTERN UNIVERSITY · PI LEWIS, KIM · 2016 to 2020
$8.9M
Structural and Biochemical Analyses of Type II DNA TopoisomerasesR01CA077373 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI BERGER, JAMES M. · 1999 to 2021
$7.6M
NCI NIH HHS P30 CA006973NCI NIH HHS R01 CA077373NIAID NIH HHS P01 AI118687NIGMS NIH HHS P30 GM133893
6 · The paper itself

Abstract

The antimicrobial resistance crisis requires the introduction of novel antibiotics. The use of conventional broad-spectrum compounds selects for resistance in off-target pathogens and harms the microbiome. This is especially true for Mycobacterium tuberculosis, where treatment requires a 6-month course of antibiotics. Here we show that a novel antimicrobial from Photorhabdus noenieputensis, which we named evybactin, is a potent and selective antibiotic acting against M. tuberculosis. Evybactin targets DNA gyrase and binds to a site overlapping with synthetic thiophene poisons. Given the conserved nature of DNA gyrase, the observed selectivity against M. tuberculosis is puzzling. We found that evybactin is smuggled into the cell by a promiscuous transporter of hydrophilic compounds, BacA. Evybactin is the first, but likely not the only, antimicrobial compound found to employ this unusual mechanism of selectivity.

Indexed as

Mycobacterium tuberculosisPoisonsTuberculosisAnti-Bacterial AgentsAntitubercular AgentsDNA GyraseHumansThiophenesTopoisomerase II InhibitorsAnti-Bacterial AgentsAntitubercular AgentsDNA GyrasePoisonsThiophenesTopoisomerase II Inhibitors

Identifiers

PMID35996001
PMCPMC9844538

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.