Evidence map›Paper›PMID 35995898›Full record

ArticleJournal of digital imaging2022

Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology.

Christopher P Bridge, Chris Gorman, Steven Pieper, Sean W Doyle, Jochen K Lennerz, Jayashree Kalpathy-Cramer, David A Clunie, Andriy Y Fedorov, Markus D Herrmann

Abstract read
In one paragraph

Article in Journal of digital imaging, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Multi-modal dataset creation for federated learning with DICOM-structured reports.International journal of computer assisted radiology and surgery · 2025
    Article
  5. Article
  6. Article
  7. National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence.Radiographics : a review publication of the Radiological Society of North America, Inc · 2023
    Article
  8. Article
  9. Thirty Years of the DICOM Standard.Tomography (Ann Arbor, Mich.) · 2023
    Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Christopher P BridgeMartinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0002-2242-351X
Chris GormanComputational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Steven PieperIsomics, Inc., Cambridge, MA, USA.
Sean W DoyleMGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA.
Jochen K LennerzCenter for Integrated Diagnostics, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Jayashree Kalpathy-CramerMartinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA.
David A CluniePixelMed Publishing, LLC., Bangor, PA, USA.
Andriy Y FedorovDepartment of Radiology, Harvard Medical School, Boston, MA, USA.
Markus D HerrmannComputational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA. mdherrmann@mgh.harvard.edu.

Funding

Training and DisseminationP41EB015902 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI KIKINIS, RON, WESTIN, CARL-FREDRIK · 2012 to 2022
$20.9M
TRD 3 - Enabling Technologies for Intraprocedural GuidanceP41EB028741 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI Nobuhiko Hata, CLARE M TEMPANY · 2021 to 2026
$10.7M
Lymph Node Quantification System for Multisite Clinical TrialsR01CA235589 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI GORDON J HARRIS, Ron Kikinis · 2019 to 2026
$4.5M
A Quantitative PET/CT Research Resource for Co-Clinical Imaging of Lung Cancer TherapiesU24CA264044 · NCI · UNIVERSITY OF WASHINGTON · PI HOUGHTON, A MCGARRY, KINAHAN, PAUL E. · 2021 to 2025
$2.9M
Development of Methods for a Simplified and Reliable Prostate Cancer MRI ExamR01CA241817 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI MAIER, STEPHAN E · 2020 to 2025
$2.3M
Distributed Learning of Deep Learning Models for Cancer ResearchU01CA242879 · NCI · STANFORD UNIVERSITY · PI KALPATHY-CRAMER, JAYASHREE, RUBIN, DANIEL L · 2019 to 2021
$1.2M
NCI NIH HHS HHSN26110071NCI NIH HHS R01 CA241817NCI NIH HHS U01 CA242879NCI NIH HHS U01CA242879NCI NIH HHS U24 CA264044NIBIB NIH HHS P41 EB015902NIBIB NIH HHS P41 EB028741NIBIB NIH HHS P41EB028741NIH HHS 5P41EB015902NIH HHS 5R01CA235589
6 · The paper itself

Abstract

Machine learning (ML) is revolutionizing image-based diagnostics in pathology and radiology. ML models have shown promising results in research settings, but the lack of interoperability between ML systems and enterprise medical imaging systems has been a major barrier for clinical integration and evaluation. The DICOM

Indexed as

RadiologyRadiology Information SystemsData CurationEcosystemHumansMachine LearningTomography, X-Ray ComputedDICOMMachine learningPythonSegmentationsSoftwareStructured reports

Identifiers

PMID35995898
PMCPMC9712874

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.