Evidence map›Paper›PMID 35993699›Full record

ArticlemSphere2022

The β-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation.

Xiansha Xiao, Xiang Feng, Jin Hee Yoo, Amanda Kovach, K Heran Darwin, Huilin Li

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xiansha XiaoDepartment of Structural Biology, Van Andel Institutegrid.251017.0, Grand Rapids, Michigan, USA.
Xiang FengDepartment of Structural Biology, Van Andel Institutegrid.251017.0, Grand Rapids, Michigan, USA.
Jin Hee YooDepartment of Microbiology, New York University School of Medicinegrid.201076.2, New York, New York, USA.
Amanda KovachDepartment of Structural Biology, Van Andel Institutegrid.251017.0, Grand Rapids, Michigan, USA.
K Heran DarwinDepartment of Microbiology, New York University School of Medicinegrid.201076.2, New York, New York, USA.ORCID 0000-0002-5043-7548
Huilin LiDepartment of Structural Biology, Van Andel Institutegrid.251017.0, Grand Rapids, Michigan, USA.ORCID 0000-0001-8085-8928
Van Andel Institute · USNew York University · US

Funding

PROTEASOME-DEPENDENT DEGRADATION IN MYCOBACTERIUM TUBERCULOSISR01AI088075 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Katerina Heran Darwin · 2011 to 2026
$6.5M
Structure Biology of Mycobacterium Tuberculosis Pup-Proteasome PathwayR01AI070285 · NIAID · VAN ANDEL RESEARCH INSTITUTE · PI LI, HUILIN · 2007 to 2022
$6.5M
NIAID NIH HHS R01 AI070285NIAID NIH HHS R01 AI088075
6 · The paper itself

Abstract

Mycobacterium tuberculosis possesses a Pup-proteasome system analogous to the eukaryotic ubiquitin-proteasome pathway. We have previously shown that the hexameric mycobacterial proteasome ATPase (Mpa) recruits pupylated protein substrates via interactions between amino-terminal coiled-coils in Mpa monomers and the degradation tag Pup. However, it is unclear how Mpa rings interact with a proteasome due to the presence of a carboxyl-terminal β-grasp domain unique to Mpa homologues that makes the interaction highly unstable. Here, we describe newly identified critical interactions between Mpa and 20S core proteasomes. Interestingly, the Mpa C-terminal GQYL motif binds the 20S core particle activation pocket differently than the same motif of the ATP-independent proteasome accessory factor PafE. We further found that the β-hairpin of the Mpa β-grasp domain interacts variably with the H0 helix on top of the 20S core particle via a series of ionic and hydrogen-bond interactions. Individually mutating several involved residues reduced Mpa-mediated protein degradation both

Indexed as

Mycobacterium tuberculosisAdenosine TriphosphatasesAdenosine TriphosphateAnimalsBacterial ProteinsHydrogenMiceProteasome Endopeptidase ComplexUbiquitinsAdenosine TriphosphatasesAdenosine TriphosphateBacterial ProteinsHydrogenProteasome Endopeptidase ComplexUbiquitinsATPasecryo-EMMycobacterium tuberculosisproteasome

Identifiers

PMID35993699
PMCPMC9599533
OpenAlexW4292607726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.