Evidence map›Paper›PMID 35993552›Full record

ArticleInflammatory bowel diseases2022

Transcriptional Behavior of Regulatory T Cells Predicts IBD Patient Responses to Vedolizumab Therapy.

Maria T Abreu, Julie M Davies, Maria A Quintero, Amber Delmas, Sophia Diaz, Catherine D Martinez, Thomas Venables, Adrian Reich, Gogce Crynen, Amar R Deshpande and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Inflammatory bowel diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Challenges in IBD Research 2024: Precision Medicine.Inflammatory bowel diseases · 2024
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Leukocyte Trafficking.Gastroenterology & hepatology · 2024
    Article
  16. Precision medicine in inflammatory bowel disease.Precision clinical medicine · 2023
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Maria T AbreuDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.ORCID 0000-0002-7294-0574
Julie M DaviesDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Maria A QuinteroDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Amber DelmasDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Sophia DiazDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Catherine D MartinezDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Thomas VenablesDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
Adrian ReichCenter for Computational Biology and Bioinformatics, The Scripps Research Institute, Jupiter, Florida, USA.
Gogce CrynenCenter for Computational Biology and Bioinformatics, The Scripps Research Institute, Jupiter, Florida, USA.
Amar R DeshpandeDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
David H KermanDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Oriana M DamasDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Irina FernandezDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Ana M SantanderDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Judith Pignac-KobingerDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Juan F BurguenoDivision of Gastroenterology and Hepatology, Department of Medicine, University of Miami Miller School of Medicine, Miami, Florida, USA.
Mark S SundrudDepartment of Immunology and Microbiology, The Scripps Research Institute, Jupiter, Florida, USA.
University of Miami · USScripps Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInflammatory bowel disease (IBD) involves chronic T cell-mediated inflammatory responses. Vedolizumab (VDZ), a monoclonal antibody against α4β7 integrin, inhibits lymphocyte extravasation into intestinal mucosae and is effective in ulcerative colitis (UC) and Crohn's disease (CD).

aimWe sought to identify immune cell phenotypic and gene expression signatures that related to response to VDZ.

methodsPeripheral blood (PBMC) and lamina propria mononuclear cells (LPMCs) were analyzed by flow cytometry and Cytofkit. Sorted CD4 + memory (Tmem) or regulatory T (Treg) cells from PBMC and LPMC were analyzed by RNA sequencing (RNA-seq). Clinical response (≥2-point drop in partial Mayo scores [UC] or Harvey-Bradshaw index [CD]) was assessed 14 to 22 weeks after VDZ initiation. Machine-learning models were used to infer combinatorial traits that predicted response to VDZ.

resultsSeventy-one patients were enrolled: 37 received VDZ and 21 patients remained on VDZ >2 years. Fourteen of 37 patients (38%; 8 UC, 6 CD) responded to VDZ. Immune cell phenotypes and CD4 + Tmem and Treg transcriptional behaviors were most divergent between the ileum and colon, irrespective of IBD subtype or inflammation status. Vedolizumab treatment had the greatest impact on Treg metabolic pathways, and response was associated with increased expression of genes involved in oxidative phosphorylation. The strongest clinical predictor of VDZ efficacy was concurrent use of thiopurines. Mucosal tissues offered the greatest number of response-predictive biomarkers, whereas PBMC Treg-expressed genes were the best predictors in combinatorial models of response.

conclusionsMucosal and peripheral blood immune cell phenotypes and transcriptional profiles can inform VDZ efficacy and inform new opportunities for combination therapies.

Indexed as

Colitis, UlcerativeCrohn DiseaseInflammatory Bowel DiseasesAntibodies, Monoclonal, HumanizedGastrointestinal AgentsHumansLeukocytes, MononuclearT-Lymphocytes, RegulatoryTreatment OutcomeAntibodies, Monoclonal, HumanizedGastrointestinal AgentsvedolizumabbiomarkersCrohn’s diseaseinflammatory bowel diseasememory T cellsulcerative colitis

Identifiers

PMID35993552
PMCPMC9713523
OpenAlexW4292596083

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.