Evidence map›Paper›PMID 35993291›Full record

ArticleAnimal genetics2022

Unique genetic signature and selection footprints in Dutch population of German Longhaired Pointer dogs.

Yun Yu, Langqing Liu, Jack Windig, Mirte Bosse, Martien A M Groenen, Richard P M A Crooijmans

Open access · hybridAbstract read
In one paragraph

Article in Animal genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yun YuAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.ORCID https://orcid.org/0000-0001-7521-110X
Langqing LiuDivision of Evolutionary Biology, Faculty of Biology, Ludwig-Maximilians-Universität (LMU) München, Planegg-Martinsried, Germany.
Jack WindigAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Mirte BosseAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Martien A M GroenenAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Richard P M A CrooijmansAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Wageningen University & Research · NLLudwig-Maximilians-Universität München · DEVrije Universiteit Amsterdam · NL

Funding

Nederlands Kankerfonds voor Dieren
6 · The paper itself

Abstract

The German Longhaired Pointer (GLP) breed is a versatile pointer dog breed. In the current study, we investigated the genetic diversity of these dogs based on SNP array data and compared it to 11 other pointer setter breeds. The results show that GLPs have a relatively low level of inbreeding among these pointer breeds. In addition, with the availability of pedigree information of the GLPs, we demonstrate that the correlation between pedigree-based inbreeding and genotype-based inbreeding coefficients was high (R = 0.89 and 0.85). By investigating population structure between these 12 pointer setter breeds we showed that GLP is a breed distinct from other pointers and shares common ancestry with a few other pointing breeds. Finally, we identified selection signatures in GLPs using the runs of homozygosity islands method. The most significant runs of homozygosity island was detected on chromosome 30 harboring the genes RYR3, FMN1, and GREM1. The RYR3 gene plays a role in skeletal muscle contraction while the FMN1 and GREM1 genes are involved in limb development. The selection on these three genes could have contributed to the excellent athletic performance of GLPs, which is an extremely important characteristic for this hunting dog.

Indexed as

Genetic VariationRyanodine Receptor Calcium Release ChannelAnimalsDogsGenotypeHomozygoteInbreedingPolymorphism, Single NucleotideSelection, GeneticRyanodine Receptor Calcium Release Channelgenetic relationshipinbreedingpointer dogruns of homozygosityselection signature

Identifiers

PMID35993291
PMCPMC9804189
OpenAlexW4292583084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.