Evidence map›Paper›PMID 35992305›Full record

ArticleiScience2022

Identification of potent inhibitors of SARS-CoV-2 infection by combined pharmacological evaluation and cellular network prioritization.

J J Patten, Patrick T Keiser, Deisy Morselli-Gysi, Giulia Menichetti, Hiroyuki Mori, Callie J Donahue, Xiao Gan, Italo do Valle, Kathleen Geoghegan-Barek, Manu Anantpadma and 16 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 1 country.

J J PattenDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Patrick T KeiserDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Deisy Morselli-GysiNetwork Science Institute, Northeastern University, Boston, MA 02115, USA.
Giulia MenichettiNetwork Science Institute, Northeastern University, Boston, MA 02115, USA.
Hiroyuki MoriDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Callie J DonahueDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Xiao GanNetwork Science Institute, Northeastern University, Boston, MA 02115, USA.
Italo do ValleNetwork Science Institute, Northeastern University, Boston, MA 02115, USA.
Kathleen Geoghegan-BarekDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Manu AnantpadmaDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
RuthMabel BoytzDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Jacob L BerriganDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Sarah H StubbsDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Tess AyazikaDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Colin O'LearyDepartment of Genetics, Program in Virology, Harvard Medical School, Division of Genetics, Brigham and Women's Hospital, Howard Hughes Medical Institute, Boston, MA, USA.
Sallieu JallohDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Florence WagnerCenter for the Development of Therapeutics, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Seyoum AyehunieMatTek Corporation, A BICO Company, Ashland, MA 01721, USA.
Stephen J ElledgeDepartment of Genetics, Program in Virology, Harvard Medical School, Division of Genetics, Brigham and Women's Hospital, Howard Hughes Medical Institute, Boston, MA, USA.
Deborah AndersonDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Joseph LoscalzoDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Marinka ZitnikDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Suryaram GummuluruDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Mark N NamchukDepartment of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Albert-László BarabásiNetwork Science Institute, Northeastern University, Boston, MA 02115, USA.
Robert A DaveyDepartment of Microbiology, Boston University School of Medicine and NEIDL, Boston University, Boston, MA 02118, USA.
Boston University · USBrigham and Women's Hospital · USHarvard University · USBroad Institute · USMatTek Corporation (United States) · USNortheastern University · US

Funding

Regulatory Compliance CoreUC7AI095321 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ROBERT A DAVEY · 2014 to 2026
$159.3M
Virology BSL4 CoreP01AI120943 · NIAID · WASHINGTON UNIVERSITY · PI Gaya K. Amarasinghe · 2016 to 2026
$30.2M
Boston Biomedical Innovation CenterU54HL119145 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI GOLAN, DAVID E., LOSCALZO, JOSEPH · 2013 to 2021
$18.8M
Systems Biology of Airway DiseaseP01HL132825 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI DEMEO, DAWN L · 2016 to 2020
$12.6M
Center for Integrated Approaches to Undiagnosed DiseasesU01HG007690 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 2014 to 2022
$10.4M
Mechanism of cell-associated HIV-1 transmissionR01AI064099 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GUMMULURU, SURYARAM · 2005 to 2020
$5.9M
Small Molecule Inhibitors of Ebola Virus Polymerase FunctionR01AI125453 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BASLER, CHRISTOPHER F · 2017 to 2021
$4.3M
The Phathophenotype Landscape of Complex DiseaseU01HL108630 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 2011 to 2014
$2.7M
Antiviral Lead Identification to Treat Filovirus InfectionsR01AI128364 · NIAID · PURDUE UNIVERSITY · PI DAVEY, ROBERT A, DAVISSON, VINCENT JO · 2019 to 2022
$2.6M
NHGRI NIH HHS U01 HG007690NHLBI NIH HHS P01 HL132825NHLBI NIH HHS U01 HL108630NHLBI NIH HHS U54 HL119145NIAID NIH HHS P01 AI120943NIAID NIH HHS R01 AI064099NIAID NIH HHS R01 AI125453NIAID NIH HHS R01 AI128364NIAID NIH HHS UC7 AI095321
6 · The paper itself

Abstract

Pharmacologically active compounds with known biological targets were evaluated for inhibition of SARS-CoV-2 infection in cell and tissue models to help identify potent classes of active small molecules and to better understand host-virus interactions. We evaluated 6,710 clinical and preclinical compounds targeting 2,183 host proteins by immunocytofluorescence-based screening to identify SARS-CoV-2 infection inhibitors. Computationally integrating relationships between small molecule structure, dose-response antiviral activity, host target, and cell interactome produced cellular networks important for infection. This analysis revealed 389 small molecules with micromolar to low nanomolar activities, representing >12 scaffold classes and 813 host targets. Representatives were evaluated for mechanism of action in stable and primary human cell models with SARS-CoV-2 variants and MERS-CoV. One promising candidate, obatoclax, significantly reduced SARS-CoV-2 viral lung load in mice. Ultimately, this work establishes a rigorous approach for future pharmacological and computational identification of host factor dependencies and treatments for viral diseases.

Indexed as

BioinformaticsPharmacoinformaticsPharmacologyVirology

Identifiers

PMID35992305
PMCPMC9374494
OpenAlexW4291036705

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.