Evidence map›Paper›PMID 35992080›Full record

ArticleiScience2022

Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome.

Tom van der Valk, Marianne Dehasque, J Camilo Chacón-Duque, Nikolay Oskolkov, Sergey Vartanyan, Peter D Heintzman, Patrícia Pečnerová, David Díez-Del-Molino, Love Dalén

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Tom van der ValkDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.
Marianne DehasqueDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.
J Camilo Chacón-DuqueCentre for Palaeogenetics, Svante Arrhenius väg 20C, SE-10691 Stockholm, Sweden.
Nikolay OskolkovDepartment of Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Lund University, Sweden.
Sergey VartanyanNorth-East Interdisciplinary Scientific Research Institute n.a. N.A. Shilo, Far East Branch, Russian Academy of Sciences (NEISRI FEB RAS), Magadan, Russia.
Peter D HeintzmanThe Arctic University Museum of Norway, UiT - The Arctic University of Norway, Tromsø, Norway.
Patrícia PečnerováSection for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
David Díez-Del-MolinoDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.
Love DalénDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.
Centre for Palaeogenetics · SEStockholm University · SELund University · SERussian Academy of Sciences · RUUiT The Arctic University of Norway · NOUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Woolly mammoths had a set of adaptations that enabled them to thrive in the Arctic environment. Many mammoth-specific single nucleotide polymorphisms (SNPs) responsible for unique mammoth traits have been previously identified from ancient genomes. However, a multitude of other genetic variants likely contributed to woolly mammoth evolution. In this study, we sequenced two woolly mammoth genomes and combined these with previously sequenced mammoth and elephant genomes to conduct a survey of mammoth-specific deletions and indels. We find that deletions are highly enriched in non-coding regions, suggesting selection against structural variants that affect protein sequences. Nonetheless, at least 87 woolly mammoth genes contain deletions or indels that modify the coding sequence, including genes involved in skeletal morphology and hair growth. These results suggest that deletions and indels contributed to the unique phenotypic adaptations of the woolly mammoth, and were potentially critical to surviving in its natural environment.

Indexed as

BioinformaticsBiological sciencesEvolutionary biologyNatural sciencesPhylogeneticsZoology

Identifiers

PMID35992080
PMCPMC9382235
OpenAlexW4289315042

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.