Evidence map›Paper›PMID 35992069›Full record

ArticleiScience2022

Single cell full-length transcriptome of human subcutaneous adipose tissue reveals unique and heterogeneous cell populations.

Katie L Whytock, Yifei Sun, Adeline Divoux, GongXin Yu, Steven R Smith, Martin J Walsh, Lauren M Sparks

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Katie L WhytockTranslational Research Institute, AdventHealth, 301 E Princeton St, Orlando, FL 32804, USA.
Yifei SunIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Adeline DivouxTranslational Research Institute, AdventHealth, 301 E Princeton St, Orlando, FL 32804, USA.
GongXin YuTranslational Research Institute, AdventHealth, 301 E Princeton St, Orlando, FL 32804, USA.
Steven R SmithTranslational Research Institute, AdventHealth, 301 E Princeton St, Orlando, FL 32804, USA.
Martin J WalshIcahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Lauren M SparksTranslational Research Institute, AdventHealth, 301 E Princeton St, Orlando, FL 32804, USA.
Translational Research Institute for Metabolism and Diabetes · USIcahn School of Medicine at Mount Sinai · US

Funding

The Exercise and Physical Activity Collaborative Team (ExPACT): a Proposed MoTrPAC Clinical CenterU01AR071133 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BUFORD, THOMAS W, GOODPASTER, BRET H · 2017 to 2024
$16.7M
Underlying chromatin architecture defines functionality for CFTR expressionR01DK118946 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WALSH, MARTIN JOHN · 2018 to 2022
$2.1M
NIAMS NIH HHS U01 AR071133
6 · The paper itself

Abstract

White adipose tissue (WAT) is a complex mixture of adipocytes and non-adipogenic cells. Characterizing the cellular composition of WAT is critical for identifying where potential alterations occur that impact metabolism. Most single-cell (sc) RNA-Seq studies focused on the stromal vascular fraction (SVF) which does not contain adipocytes and have used technology that has a 3' or 5' bias. Using full-length sc/single-nuclei (sn) RNA-Seq technology, we interrogated the transcriptional composition of WAT using: snRNA-Seq of whole tissue, snRNA-Seq of isolated adipocytes, and scRNA-Seq of SVF. Whole WAT snRNA-Seq provided coverage of major cell types, identified three distinct adipocyte clusters, and was capable of tracking adipocyte differentiation with pseudotime. Compared to WAT, adipocyte snRNA-Seq was unable to match adipocyte heterogeneity. SVF scRNA-Seq provided greater resolution of non-adipogenic cells. These findings provide critical evidence for the utility of sc full-length transcriptomics in WAT and SVF in humans.

Indexed as

Cell biologyOmicsTranscriptomics

Identifiers

PMID35992069
PMCPMC9385549
OpenAlexW4285602151

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.