Evidence map›Paper›PMID 35990517›Full record

ArticleNature cardiovascular research2022

Single cell transcriptomics and TCR reconstruction reveal CD4 T cell response to MHC-II-restricted APOB epitope in human cardiovascular disease.

Ryosuke Saigusa, Payel Roy, Antoine Freuchet, Rishab Gulati, Yanal Ghosheh, Sujit Silas Armstrong Suthahar, Christopher P Durant, David B Hanna, William B Kiosses, Marco Orecchioni and 15 more

Open access · greenAbstract read
In one paragraph

Article in Nature cardiovascular research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Review
  3. T Cell Thoughts.Immunological reviews · 2026
    Review
  4. Review
  5. Article
  6. Regulatory T cells in cancer and inflammation.Signal transduction and targeted therapy · 2026
    Review
  7. Review
  8. Cardiovascular Manifestations and Immunobiology of Sarcoidosis.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Review
  9. Review
  10. ApoB-specific CD4Frontiers in immunology · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Loss of effector TNature cardiovascular research · 2025
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 1 country.

Ryosuke SaigusaLa Jolla Institute for Immunology, La Jolla, CA, USA.
Payel RoyLa Jolla Institute for Immunology, La Jolla, CA, USA.
Antoine FreuchetLa Jolla Institute for Immunology, La Jolla, CA, USA.
Rishab GulatiLa Jolla Institute for Immunology, La Jolla, CA, USA.
Yanal GhoshehLa Jolla Institute for Immunology, La Jolla, CA, USA.
Sujit Silas Armstrong SuthaharLa Jolla Institute for Immunology, La Jolla, CA, USA.
Christopher P DurantLa Jolla Institute for Immunology, La Jolla, CA, USA.
David B HannaAlbert Einstein College of Medicine, Department of Epidemiology and Population Health, Bronx, NY, USA.
William B KiossesLa Jolla Institute for Immunology, La Jolla, CA, USA.
Marco OrecchioniLa Jolla Institute for Immunology, La Jolla, CA, USA.
Lai WenLa Jolla Institute for Immunology, La Jolla, CA, USA.
Runpei WuLa Jolla Institute for Immunology, La Jolla, CA, USA.
Mark H KuniholmUniversity at Albany, Department of Epidemiology and Biostatistics, Rensselaer, NY, USA.
Alan L LandayRush University Medical Center, Department of Internal Medicine, Chicago, IL, USA.
Kathryn AnastosAlbert Einstein College of Medicine, Departments of Medicine and Epidemiology & Population Health, Bronx NY, USA.
Phyllis C TienDepartment of Medicine, University of California, San Francisco, San Francisco, CA; Department of Veterans Affairs Medical Center, San Francisco, CA, USA.
Stephen J GangeJohns Hopkins University, Bloomberg School of Public Health, Baltimore MD, USA.
Seble KassayeGeorgetown University, Georgetown University Medical Center, Washington, DC, USA.
Jenifer VallejoLa Jolla Institute for Immunology, La Jolla, CA, USA.
Catherine C HedrickLa Jolla Institute for Immunology, La Jolla, CA, USA.
William W KwokBenaroya Research Institute at Virginia Mason, Tetramer Core Laboratory, Seattle, WA, USA.
Alessandro SetteLa Jolla Institute for Immunology, La Jolla, CA, USA.
Howard N HodisKeck School of Medicine, University of Southern California Departments of Medicine and Population and Public Health Sciences, Los Angeles, CA, USA.
Robert C KaplanAlbert Einstein College of Medicine, Department of Epidemiology and Population Health, Bronx, NY, USA.
Klaus LeyLa Jolla Institute for Immunology, La Jolla, CA, USA.
La Jolla Institute for Immunology · USAlbert Einstein College of Medicine · USGeorgetown University · USJohns Hopkins University · USRush University Medical Center · USSan Francisco VA Medical Center · USUniversity at Albany, State University of New York · USUniversity of Southern California · USVirginia Mason Medical Center · US

Funding

UCLA Clinical Translational Science InstituteUL1TR001881 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARLEEN F. BROWN, ARASH NAEIM · 2016 to 2026
$118.1M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Engaging University of California Stakeholders for Biorespository ResearchUL1TR000004 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$78.0M
Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
QAQC Johns Hopkins Institute for Clinical and Translational ResearchUL1TR003098 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2019 to 2023
$57.7M
SF Bay Area MACS/WIHS Combined Cohort StudyU01HL146242 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Bradley E Aouizerat, Jennifer Cohen Price · 2019 to 2026
$36.3M
Sex differences in the role of multi-omicsin HIV-associated carotid artery atherosclerosisU01HL146193 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI Stephen J Gange, Elizabeth Topper · 2019 to 2026
$35.8M
University of Miami Developmental Center for AIDS Research (D-CFAR)P30AI073961 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI ALLAN E RODRIGUEZ · 2007 to 2026
$33.8M
Clinical Research Sites for the MACS/WIHS Combined Cohort Study (MACS/WIHS-CCS) - Baltimore/Wash DC Center - Admin Supplement: Vision and dual sensory loss in HIV-infected older adultsU01HL146201 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI TODD T BROWN, Joseph B. Margolick · 2019 to 2026
$33.7M
Sex differences in the role of multi-omics in HIV-associated carotid artery atherosclerosisU01HL146204 · NHLBI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI David B. Hanna, Anjali Sharma · 2019 to 2026
$33.2M
University of Pittsburgh MWCCS Clinical Research SiteU01HL146208 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Bernard Jonas C Macatangay, CHARLES R RINALDO · 2019 to 2026
$32.2M
NCATS NIH HHS UL1 TR000004NCATS NIH HHS UL1 TR001881NCATS NIH HHS UL1 TR003098NHLBI NIH HHS K01 HL137557NHLBI NIH HHS P01 HL136275NHLBI NIH HHS R01 HL148094NHLBI NIH HHS R35 HL145241NHLBI NIH HHS U01 HL146192NHLBI NIH HHS U01 HL146193NHLBI NIH HHS U01 HL146194NHLBI NIH HHS U01 HL146201NHLBI NIH HHS U01 HL146202NHLBI NIH HHS U01 HL146203NHLBI NIH HHS U01 HL146204NHLBI NIH HHS U01 HL146205NHLBI NIH HHS U01 HL146208NHLBI NIH HHS U01 HL146240NHLBI NIH HHS U01 HL146241NHLBI NIH HHS U01 HL146242NHLBI NIH HHS U01 HL146245NHLBI NIH HHS U01 HL146333NIAID NIH HHS P30 AI027767NIAID NIH HHS P30 AI050409NIAID NIH HHS P30 AI050410NIAID NIH HHS P30 AI073961NIH HHS S10 OD021831NIMH NIH HHS P30 MH116867
6 · The paper itself

Abstract

Atherosclerosis is accompanied by a CD4 T cell response to apolipoprotein B (APOB). Major Histocompatibility Complex (MHC)-II tetramers can be used to isolate antigen-specific CD4 T cells by flow sorting. Here, we produce, validate and use an MHC-II tetramer, DRB1*07:01 APOB-p18, to sort APOB-p18-specific cells from peripheral blood mononuclear cell samples from 8 DRB1*07:01+ women with and without subclinical cardiovascular disease (sCVD). Single cell RNA sequencing showed that transcriptomes of tetramer+ cells were between regulatory and memory T cells in healthy women and moved closer to memory T cells in women with sCVD. TCR sequencing of tetramer+ cells showed clonal expansion and V and J segment usage similar to those found in regulatory T cells. These findings suggest that APOB-specific regulatory T cells may switch to a more memory-like phenotype in women with atherosclerosis. Mouse studies showed that such switched cells promote atherosclerosis.

Identifiers

PMID35990517
PMCPMC9383695
OpenAlexW4280587300

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.