Evidence map›Paper›PMID 35988477›Full record

ArticleUltramicroscopy2022

Chemical and cryo-collection of muscle samples for transmission electron microscopy using Methacarn and dimethyl sulfoxide

Dylan Wilburn, Emma Fletcher, Ahmed Ismaeel, Dimitrios Miserlis, Bernd Zechmann, Panagiotis Koutakis

Open access · greenAbstract read
In one paragraph

Article in Ultramicroscopy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Dylan WilburnDepartment of Health, Human Performance, and Recreation, Baylor University, 254-710-2911, B.207 Baylor Science Building, One Bear Place #97388, 76798-7388, Waco, TX 76706, USA.
Emma FletcherDepartment of Biology, Baylor University, Waco, TX 76706, USA.
Ahmed IsmaeelDepartment of Biology, Baylor University, Waco, TX 76706, USA.
Dimitrios MiserlisDepartment of Surgery, University of Texas Health Science Center San Antonio, San Antonio, TX, USA.
Bernd ZechmannDepartment of Biology, Baylor University, Waco, TX 76706, USA; Center for Microscopy and Imaging, Baylor University, Waco, Texas 76706, USA.
Panagiotis KoutakisDepartment of Biology, Baylor University, Waco, TX 76706, USA. Electronic address: panagiotis_koutakis@baylor.edu.
Baylor University · USThe University of Texas Health Science Center at San Antonio · US

Funding

The Role of microRNA-210 in regulating oxidative stress in patients with peripheral artery diseaseR01AG064420 · NIA · UNIVERSITY OF WEST FLORIDA · PI KOUTAKIS, PANAGIOTIS · 2019 to 2023
$3.3M
NIA NIH HHS R01 AG064420
6 · The paper itself

Abstract

Muscle samples are commonly chemically fixed or frozen immediately upon collection for biochemical and morphological analysis. Certain fixatives such as glutaraldehyde and osmium tetroxide are widely used for transmission electron microscopy (TEM) and lead to adequate preservation of muscle ultrastructure, but do not preserve the molecular features of samples. Methacarn is suggested to be a preferable chemical fixative for light microscopy because it maintains immunohistological features of samples. However, the efficacy of methacarn to preserve ultrastructural features as a primary chemical fixative for TEM is currently unclear. Additionally, cryo-preservation of samples for TEM analysis involves freezing processes such as plunge freezing, slam freezing, or high pressure freezing. High pressure freezing is the considered the gold standard but requires costly equipment and may not be a viable option for many labs collecting tissue samples from remote locations. Dimethyl sulfoxide (DMSO) is a commonly used cryoprotectant that may allow for better structural preservation of samples by impairing ice damage that occurs during plunge/snap freezing. We aimed to assess the effectiveness of methacarn as a primary chemical fixative and determine the effect of pre-coating samples with DMSO before plunge/snap freezing tissues to be prepared for TEM. The micrographs of the methcarn-fixed samples indicate a loss of Z-disk integrity, intermyofibrillar space, mitochondria structure, and lipids. Ultimately, methacarn is not a viable primary fixative for tissue sample preparation for TEM. Similarly, liquid nitrogen freezing of samples wrapped in aluminum foil produced non-uniform Z-disk alignments that appeared smeared with swollen mitochondria. DMSO coating before freezing appears to lessen the alterations to contractile and mitochondrial morphological structures. DMSO appears to be useful for preserving the ultrastructure of sarcomeres if samples are covered before freezing.

Indexed as

Dimethyl SulfoxideOsmium TetroxideAcetic AcidAluminumChloroformCryopreservationFixativesGlutaralIceMethanolMicroscopy, Electron, TransmissionMusclesAcetic AcidAluminumChloroformDimethyl SulfoxideFixativesGlutaralIcemethacarnMethanolOsmium TetroxideCryoprotectantFreezing fixationMuscleSample preparationSarcomereTransmission electron microscopyUltrastructure

Identifiers

PMID35988477
PMCPMC9511158
OpenAlexW4290963495

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.