Evidence map›Paper›PMID 35986264›Full record

ArticleBMC infectious diseases2022

Mixed genotypes of Orientia tsutsugamushi in conserved genes and a single immune-dominant tsa56 genotype discovered from a patient with scrub typhus in Hainan Island, China: a case report.

Chuanning Tang, Liyuan Zhang, Yi Huang, Wenhui Mai, Liying Xue, Gaoyu Wang, Shu Wen, Ruoyan Peng, Kunliang Wu, Xiuying Tian and 6 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Chuanning Tang *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Liyuan Zhang *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Yi Huang *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Wenhui Mai *Haikou Maternal and Child Health Hospital, Haikou, 571199, Hainan, China.
Liying XueKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Gaoyu WangKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Shu WenClinical Laboratory, People's Hospital of Qiongzhong Li Miao Autonomous County, Qiongzhong, Hainan, China.
Ruoyan PengKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Kunliang WuKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Xiuying TianKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Hua PeiDepartment of Infectious Disease, The Second Affiliated Hospital of Hainan Medical University, Haikou, China.
Jiang DuKey Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Kwok-Yung YuenAcademician Workstation of the Hainan Province, Hainan Medical University, Haikou, 571199, Hainan, China.
Jasper Fuk-Woo Chan *Clinical Laboratory, People's Hospital of Qiongzhong Li Miao Autonomous County, Qiongzhong, Hainan, China.
Yongguo Du *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China.
Feifei Yin *Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, 571199, China. yinfeifeiff@163.com.ORCID http://orcid.org/0000-0001-6195-0614
Hainan Medical University · CNHanzhong People's Hospital · CNHainan Maternal and Child Health Hospital · CNUniversity of Hong Kong - Shenzhen Hospital · CN

Funding

Education Department of Hainan Province Hnky021-40Hainan Provincial Natural Science Foundation of China 819QN360Hainan Provincial Natural Science Foundation of China 820RC628Key Laboratory of Medical Electrophysiology of Ministry of Education JBGS202105the Hainan Provincial Natural Science Foundation of China 2019RC218the Hainan Provincial Natural Science Foundation of China 820QN267the Hainan talent development project SRC200003the Major Science and Technology Program of Hainan Province ZDKJ202003the National Natural Science Foundation of China 81860367the National Natural Science Foundation of China 82060378the Open Foundation of Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University 2021TTM005the Open Foundation of Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University HYPY201919the research project of Hainan Academy Innovation Platform YSPTZX202004
6 · The paper itself

Abstract

backgroundOrientia tsutsugamushi (O. tsutsugamushi), an obligate intracellular bacterium, is transmitted to humans through infected larval trombiculid mite bites, causing scrub typhus. Mixed genotypes of O. tsutsugamushi in canonical conserved genes were reported in 8-25% of blood samples from patients. Yet, there are few clinical descriptions of these mixed O. tsutsugamushi-infected patients. CASE PRESENTATION: We report a patient with scrub typhus complicated with pulmonary involvement and hepatic dysfunction, who carried mixed genotypes of the conserved genes but had a single immune-dominant 56-kDa type-specific antigen (tsa56) genotype. The patient was successfully recovered by doxycycline treatment.

conclusionsIn this reported case, both patient's eschar and blood samples have repeatedly shown the same results, i.e., no variants were discovered in tsa56 gene that bears multiple hypervariable regions. Whereas the selected highly conserved genes were identified with up to 32 variants in a 2700 base-pair concatenated sequence. The prevalence, disease severity and mechanism of these single-tsa56-genotype mixed infections remain to be investigated on a large scale with more cases.

Indexed as

Orientia tsutsugamushiScrub TyphusTrombiculidaeAnimalsChinaGenotypeHumansMixed-infectionsMulti-locus sequence typingOrientia tsutsugamushiScrub typhustsa56

Identifiers

PMID35986264
PMCPMC9389790
OpenAlexW4292296519

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.