Evidence map›Paper›PMID 35986060›Full record

ArticleScientific reports2022

Developmental RNA-Seq transcriptomics of haploid germ cells and spermatozoa uncovers novel pathways associated with teleost spermiogenesis.

Júlia Castro-Arnau, François Chauvigné, Jessica Gómez-Garrido, Anna Esteve-Codina, Marc Dabad, Tyler Alioto, Roderick Nigel Finn, Joan Cerdà

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
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  4. An integrated roadmap of European sea bass (Frontiers in cell and developmental biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Júlia Castro-ArnauInstitute of Agrifood Research and Technology (IRTA)-Institute of Biotechnology and Biomedicine (IBB), Universitat Autònoma de Barcelona, 08193, Barcelona, Spain.ORCID 0000-0002-7091-6757
François ChauvignéInstitute of Marine Sciences, Spanish National Research Council (CSIC), 08003, Barcelona, Spain.ORCID 0000-0001-5571-7517
Jessica Gómez-GarridoCNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028, Barcelona, Spain.ORCID 0000-0001-6409-8009
Anna Esteve-CodinaCNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028, Barcelona, Spain.ORCID 0000-0003-0361-2873
Marc DabadCNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028, Barcelona, Spain.ORCID 0000-0002-6094-747X
Tyler AliotoCNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028, Barcelona, Spain.ORCID 0000-0002-2960-5420
Roderick Nigel FinnInstitute of Agrifood Research and Technology (IRTA)-Institute of Biotechnology and Biomedicine (IBB), Universitat Autònoma de Barcelona, 08193, Barcelona, Spain.ORCID 0000-0002-8776-3945
Joan CerdàInstitute of Agrifood Research and Technology (IRTA)-Institute of Biotechnology and Biomedicine (IBB), Universitat Autònoma de Barcelona, 08193, Barcelona, Spain. joan.cerda@irta.cat.ORCID 0000-0003-2568-6398
Centre for Genomic Regulation · ESUniversitat Autònoma de Barcelona · ESConsejo Superior de Investigaciones Científicas · ESUniversitat Pompeu Fabra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In non-mammalian vertebrates, the molecular mechanisms involved in the transformation of haploid germ cells (HGCs) into spermatozoa (spermiogenesis) are largely unknown. Here, we investigated this process in the marine teleost gilthead seabream (Sparus aurata) through the examination of the changes in the transcriptome between cell-sorted HGCs and ejaculated sperm (SPZ

Indexed as

RNA, Long NoncodingSea BreamAnimalsGerm CellsHaploidyMaleRNA-SeqSemenSpermatogenesisSpermatozoaTranscriptomeRNA, Long Noncoding

Identifiers

PMID35986060
PMCPMC9391476
OpenAlexW4292371283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.