Evidence map›Paper›PMID 35985358›Full record

SynthesisThe Lancet. Respiratory medicine2023

Longitudinal lung function and gas transfer in individuals with idiopathic pulmonary fibrosis: a genome-wide association study.

Richard J Allen, Justin M Oldham, David A Jenkins, Olivia C Leavy, Beatriz Guillen-Guio, Carl A Melbourne, Shwu-Fan Ma, Jonathan Jou, John S Kim, CleanUP-IPF Investigators of the Pulmonary Trials Cooperative and 22 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in The Lancet. Respiratory medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  5. Article
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  7. Observational
  8. S100A8Frontiers in immunology · 2026
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  13. The role of theERJ open research · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 20 institutions in 3 countries.

Richard J AllenDepartment of Health Sciences, University of Leicester, Leicester, UK. Electronic address: rja34@leicester.ac.uk.
Justin M OldhamDivision of Pulmonary and Critical Care Medicine, University of Michigan, Ann Arbor, MI, USA.
David A JenkinsDivision of Informatics, Imaging & Data Sciences, University of Manchester, Manchester, UK.
Olivia C LeavyDepartment of Health Sciences, University of Leicester, Leicester, UK.
Beatriz Guillen-GuioDepartment of Health Sciences, University of Leicester, Leicester, UK.
Carl A MelbourneDepartment of Health Sciences, University of Leicester, Leicester, UK.
Shwu-Fan MaDivision of Pulmonary & Critical Care Medicine, University of Virginia, Charlottesville, VA, USA.
Jonathan JouDepartment of Surgery, University of Illinois College of Medicine at Peoria, Peoria, IL, USA.
John S KimDivision of Pulmonary & Critical Care Medicine, University of Virginia, Charlottesville, VA, USA.
CleanUP-IPF Investigators of the Pulmonary Trials Cooperative
William A FahyDiscovery Medicine, GlaxoSmithKline, Stevenage, UK.
Eunice OballaDiscovery Medicine, GlaxoSmithKline, Stevenage, UK.
Richard B HubbardDivision of Epidemiology and Public Health, University of Nottingham, Nottingham, UK; National Institute for Health Research, Nottingham Biomedical Research Centre, Nottingham University Hospitals NHS Trust, Nottingham, UK.
Vidya NavaratnamDivision of Epidemiology and Public Health, University of Nottingham, Nottingham, UK; National Institute for Health Research, Nottingham Biomedical Research Centre, Nottingham University Hospitals NHS Trust, Nottingham, UK; Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, QLD, Australia.
Rebecca BraybrookeDivision of Epidemiology and Public Health, University of Nottingham, Nottingham, UK; National Institute for Health Research, Nottingham Biomedical Research Centre, Nottingham University Hospitals NHS Trust, Nottingham, UK.
Gauri SainiRespiratory Medicine, Nottingham University Hospitals NHS Trust, Nottingham, UK.
Katy M RoachDepartment of Respiratory Sciences, University of Leicester, Glenfield Hospital, Leicester, UK.
Martin D TobinDepartment of Health Sciences, University of Leicester, Leicester, UK.
Nik HiraniCentre for Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, Edinburgh, UK.
Moira K B WhyteCentre for Inflammation Research, Queen's Medical Research Institute, University of Edinburgh, Edinburgh, UK.
Naftali KaminskiSection of Pulmonary, Critical Care and Sleep Medicine, Yale School of Medicine, New Haven, CT, USA.
Yingze ZhangDivision of Pulmonary, Allergy and Critical Care Medicine, The University of Pittsburgh, Pittsburgh, PA, USA.
Fernando J MartinezDivision of Pulmonary and Critical Care Medicine, Weill Cornell Medicine, New York, NY, USA.
Angela L LinderholmDepartment of Internal Medicine, University of California Davis, Davis, CA, USA.
Ayodeji AdegunsoyeSection of Pulmonary and Critical Care Medicine, University of Chicago, Chicago, IL, USA.
Mary E StrekSection of Pulmonary and Critical Care Medicine, University of Chicago, Chicago, IL, USA.
Toby M MaherNational Heart and Lung Institute, Imperial College London, London, UK; Royal Brompton and Harefield Hospitals, London, UK; Division of Pulmonary and Critical Care Medicine, University of Southern California, Los Angeles, CA, USA.
Philip L MolyneauxNational Heart and Lung Institute, Imperial College London, London, UK; Royal Brompton and Harefield Hospitals, London, UK.
Carlos FloresResearch Unit, Hospital Universitario Nuestra Señora de Candelaria, Santa Cruz de Tenerife, Spain; CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain; Genomics Division, Instituto Tecnológico y de Energías Renovables, Santa Cruz de Tenerife, Spain.
Imre NothDivision of Pulmonary & Critical Care Medicine, University of Virginia, Charlottesville, VA, USA.
R Gisli JenkinsNational Heart and Lung Institute, Imperial College London, London, UK.
Louise V WainDepartment of Health Sciences, University of Leicester, Leicester, UK; National Institute for Health Research, Leicester Respiratory Biomedical Research Centre, Glenfield Hospital, Leicester, UK.
University of Virginia · USNottingham University Hospitals NHS Trust · GBUniversity of Leicester · GBGlaxoSmithKline (United Kingdom) · GBUniversity of Chicago · USCentre for Inflammation Research · GBCornell University · USGlenfield Hospital · GBHarefield Hospital · GBIllinois College · USImperial College London · GBInstituto Tecnológico y de Energías Renovables · ESLung Institute · USNIHR Leicester Biomedical Research Centre · GBNottingham Biomedical Research Centre · GBUniversity of California, Davis · USUniversity of Edinburgh · GBUniversity of Manchester · GBUniversity of Michigan–Ann Arbor · USUniversity of Pittsburgh · US

Funding

1/2 Prospective tReatment EffiCacy in IPF uSlng genOtype for Nac Selection (PRECISIONS) trial and Molecular Endophenotyping in Idiopathic Pulmonary Fibrosis and Interstitial Lung Diseases studyUH3HL145266 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MARTINEZ, FERNANDO J, NOTH, IMRE · 2021 to 2025
$11.6M
Genomic Analysis of Tissue and Cellular Heterogeneity in IPFR01HL127349 · NHLBI · YALE UNIVERSITY · PI BENOS, PANAGIOTIS V, KAMINSKI, NAFTALI · 2015 to 2025
$5.9M
Epithelial Protective Effects of Thyroid Hormone Signaling in FibrosisR01HL141852 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2019 to 2022
$3.4M
Architectural structure and regulation of TOLLIP in IPFR01HL130796 · NHLBI · UNIVERSITY OF VIRGINIA · PI NOTH, IMRE · 2016 to 2019
$3.1M
Normal Aging Lung Cell Atlas (NALCA)U01HL145567 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2019 to 2022
$2.8M
Mir-29 mimicry as a therapy for pulmonary fibrosisUH2HL123886 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2014 to 2015
$2.7M
1/2 Prospective tReatment EffiCacy in IPF uSlng genOtype for Nac Selection (PRECISIONS) trial and Molecular Endophenotyping in Idiopathic Pulmonary Fibrosis and Interstitial Lung Diseases studyUG3HL145266 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MARTINEZ, FERNANDO J, NOTH, IMRE · 2019 to 2019
$977k
Elucidating the Genomic Determinants of Outcomes in Idiopathic Pulmonary FibrosisK23HL138190 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OLDHAM, JUSTIN M · 2017 to 2021
$914k
Improving Pulmonary Fibrosis Classification with Genomics Informed Phenotypic ClustersK23HL146942 · NHLBI · UNIVERSITY OF CHICAGO · PI ADEGUNSOYE, AYODEJI · 2020 to 2024
$810k
Proteomics of Idiopathic Pulmonary FibrosisR21HL079394 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAMINSKI, NAFTALI · 2005 to 2006
$404k
Derivation and validation of a clinical-molecular signature to predict fibrotic progression and treatment response in patients with autoimmune interstitial lung diseaseR56HL158935 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI OLDHAM, JUSTIN M · 2021 to 2021
$400k
Integrating single-cell based transcriptomic signatures for identifying therapeutic targets of COPDR21HL161723 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2022 to 2023
$251k
Medical Research Council MC_PC_17228Medical Research Council MC_PC_19004Medical Research Council MC_QA137853Medical Research Council MR/V00235X/1NHLBI NIH HHS K23 HL138190NHLBI NIH HHS K23 HL146942NHLBI NIH HHS R01 HL127349NHLBI NIH HHS R01 HL130796NHLBI NIH HHS R01 HL141852NHLBI NIH HHS R21 HL079394NHLBI NIH HHS R21 HL161723NHLBI NIH HHS R56 HL158935NHLBI NIH HHS U01 HL145567NHLBI NIH HHS UG3 HL145266NHLBI NIH HHS UH2 HL123886NHLBI NIH HHS UH3 HL145266Wellcome Trust 221680/Z/20/ZWellcome Trust 225221
6 · The paper itself

Abstract

backgroundIdiopathic pulmonary fibrosis (IPF) is an incurable lung disease characterised by progressive scarring leading to alveolar stiffness, reduced lung capacity, and impeded gas transfer. We aimed to identify genetic variants associated with declining lung capacity or declining gas transfer after diagnosis of IPF.

methodsWe did a genome-wide meta-analysis of longitudinal measures of forced vital capacity (FVC) and diffusing capacity of the lung for carbon monoxide (DLCO) in individuals diagnosed with IPF. Individuals were recruited to three studies between June, 1996, and August, 2017, from across centres in the US, UK, and Spain. Suggestively significant variants were investigated further in an additional independent study (CleanUP-IPF). All four studies diagnosed cases following American Thoracic Society/European Respiratory Society guidelines. Variants were defined as significantly associated if they had a meta-analysis p<5 × 10

findings1329 individuals with a total of 5216 measures were included in the FVC analysis. 975 individuals with a total of 3361 measures were included in the DLCO analysis. For the discovery genome-wide analyses, 7 611 174 genetic variants were included in the FVC analysis and 7 536 843 in the DLCO analysis. One variant (rs115982800) located in an antisense RNA gene for protein kinase N2 (PKN2) showed a genome-wide significant association with FVC decline (-140 mL/year per risk allele [95% CI -180 to -100]; p=9·14 × 10

interpretationOur analysis identifies a genetic variant associated with disease progression, which might highlight a new biological mechanism for IPF. We found that PKN2, a Rho and Rac effector protein, is the most likely gene of interest from this analysis. PKN2 inhibitors are currently in development and signify a potential novel therapeutic approach for IPF.

fundingAction for Pulmonary Fibrosis, Medical Research Council, Wellcome Trust, and National Institutes of Health National Heart, Lung, and Blood Institute.

Indexed as

Genome-Wide Association StudyIdiopathic Pulmonary FibrosisHumansLungLung Volume MeasurementsVital Capacity

Identifiers

PMID35985358
PMCPMC10077113
OpenAlexW4296585362

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.