Evidence map›Paper›PMID 35985192›Full record

ArticleTalanta2023

Evaluation of indirect sequence-specific magneto-extraction-aided LAMP for fluorescence and electrochemical SARS-CoV-2 nucleic acid detection.

Sayantan Tripathy, Tanvi Agarkar, Arunansu Talukdar, Mrittika Sengupta, Ashvani Kumar, Souradyuti Ghosh

Abstract read
In one paragraph

Article in Talanta, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sayantan TripathyDepartment of Chemistry, Bennett University, India; Department of Biotechnology, Bennett University, India; Center of Excellence for Nanosensors and Nanomedicine, Bennett University, India.
Tanvi AgarkarDepartment of Physics, Bennett University, India.
Arunansu TalukdarGeriatric Medicine Department, Medical College and Hospital, Kolkata, India.
Mrittika SenguptaDepartment of Biotechnology, Bennett University, India; Center of Excellence for Nanosensors and Nanomedicine, Bennett University, India.
Ashvani KumarDepartment of Physics, Bennett University, India; Pristine Diamonds Pvt. Ltd, Vatva, India. Electronic address: ashuiit19@gmail.com.
Souradyuti GhoshDepartment of Chemistry, Bennett University, India; Department of Biotechnology, Bennett University, India; Center of Excellence for Nanosensors and Nanomedicine, Bennett University, India; Division of Radiation and Stress Biology, UGC-DAE CSR Kolkata Centre, Kolkata, India. Electronic address: souradyutighoshacademic@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleic acid amplification tests (NAATs) such as quantitative real-time reverse transcriptase PCR (qRT-PCR) or isothermal NAATs (iNAATs) such as loop-mediated isothermal amplification (LAMP) require pure nucleic acid free of any polymerase inhibitors as its substrate. This in turn, warrants the use of spin-column mediated extraction with centralized high-speed centrifuges. Additionally, the utilization of centralized real-time fluorescence readout and TaqMan-like molecular probes in qRT-PCR and real-time LAMP add cost and restrict their deployment. To circumvent these disadvantages, we report a novel sample-to-answer workflow comprising an indirect sequence-specific magneto-extraction (also referred to as magnetocapture, magneto-preconcentration, or magneto-enrichment) for detecting SARS-CoV-2 nucleic acid. It was followed by in situ fluorescence or electrochemical LAMP. After in silico validation of the approach's sequence selectivity against SARS-CoV-2 variants of concern, the comparative performance of indirect and direct magnetocapture in detecting SARS-CoV-2 nucleic acid in the presence of excess host nucleic acid or serum was probed. After proven superior, the sensitivity of the indirect sequence-specific magnetocapture in conjunction with electrochemical LAMP was investigated. In each case, its sensitivity was assessed through the detection of clinically relevant 10

Indexed as

COVID-19SARS-CoV-2HumansMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesRNA, ViralSensitivity and SpecificityRNA, ViralElectrochemical LAMPMagnetic sequence-specific target enrichmentQuantitative real-time LAMPSARS-CoV-2

Identifiers

PMID35985192
PMCPMC9373715

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.