Evidence map›Paper›PMID 35984891›Full record

ArticleScience advances2022

Intermediates in SARS-CoV-2 spike-mediated cell entry.

Tara C Marcink, Thomas Kicmal, Emily Armbruster, Zhening Zhang, Gillian Zipursky, Kate L Golub, Mohab Idris, Jonathan Khao, Jennifer Drew-Bear, Gael McGill and 4 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 68 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Tara C MarcinkDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID 0000-0003-4295-1229
Thomas KicmalDepartment of Microbiology and Immunology, Loyola University Chicago, Maywood, IL, USA.ORCID 0000-0001-7673-4690
Emily ArmbrusterStructural Biology Initiative, CUNY Advanced Science Research Center, City University of New York, New York, NY, USA.ORCID 0000-0001-6343-2968
Zhening ZhangDepartment of Biochemistry and Molecular Biophysics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Gillian ZipurskyDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID 0000-0003-4408-5168
Kate L GolubDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID 0000-0003-3350-9762
Mohab IdrisDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Jonathan KhaoDigizyme Inc., Brookline, MA, USA.ORCID 0000-0001-9424-7925
Jennifer Drew-BearDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Gael McGillDigizyme Inc., Brookline, MA, USA.ORCID 0000-0003-2264-0132
Tom GallagherDepartment of Microbiology and Immunology, Loyola University Chicago, Maywood, IL, USA.ORCID 0000-0002-8601-5961
Matteo PorottoDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID 0000-0003-3866-9220
Amédée des GeorgesStructural Biology Initiative, CUNY Advanced Science Research Center, City University of New York, New York, NY, USA.ORCID 0000-0002-9704-3781
Anne MosconaDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID 0000-0002-1796-8320
Columbia University · USLoyola University Chicago · USThe Graduate Center, CUNY · USDigizyme (United States) · USHarvard University · USUniversity of Campania "Luigi Vanvitelli" · IT

Funding

SARS-CoV Proteins in Heterologous Viral InfectionP01AI060699 · NIAID · UNIVERSITY OF IOWA · PI PERLMAN, STANLEY · 2004 to 2021
$21.5M
Engineering protease-resistant alpha-beta peptides for broad-spectrum antiviralsR01AI114736 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOSCONA, ANNE · 2015 to 2019
$3.7M
Engineering protease-resistant antiviral peptide inhibitors for SARS-CoV-2R01AI160961 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MOSCONA, ANNE · 2021 to 2025
$3.6M
Fusion inhibitors that block host-to-host transmission of SARS-CoV-2R01AI160953 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI POROTTO, MATTEO · 2021 to 2025
$3.6M
Understanding membrane proteins’ allosteric modulation with cryo-EMR35GM133598 · NIGMS · NEW YORK UNIVERSITY · PI Amedee des Georges · 2019 to 2026
$3.4M
Development of novel endosome-targeted Ebola virus entry inhibitors as antiviral agentsR01AI121349 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI POROTTO, MATTEO · 2016 to 2020
$3.2M
Human parainfluenza virus fusion complexglycoproteins imaged in actionF32AI152275 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARCINK, TARA · 2021 to 2023
$177k
NIAID NIH HHS F32 AI152275NIAID NIH HHS P01 AI060699NIAID NIH HHS R01 AI114736NIAID NIH HHS R01 AI121349NIAID NIH HHS R01 AI160953NIAID NIH HHS R01 AI160961NIGMS NIH HHS R35 GM133598
6 · The paper itself

Abstract

SARS-CoV-2 cell entry is completed after viral spike (S) protein-mediated membrane fusion between viral and host cell membranes. Stable prefusion and postfusion S structures have been resolved by cryo-electron microscopy and cryo-electron tomography, but the refolding intermediates on the fusion pathway are transient and have not been examined. We used an antiviral lipopeptide entry inhibitor to arrest S protein refolding and thereby capture intermediates as S proteins interact with hACE2 and fusion-activating proteases on cell-derived target membranes. Cryo-electron tomography imaged both extended and partially folded intermediate states of S2, as well as a novel late-stage conformation on the pathway to membrane fusion. The intermediates now identified in this dynamic S protein-directed fusion provide mechanistic insights that may guide the design of CoV entry inhibitors.

Indexed as

COVID-19SARS-CoV-2Spike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2Cryoelectron MicroscopyHumansVirus InternalizationACE2 protein, humanAngiotensin-Converting Enzyme 2Spike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID35984891
PMCPMC9390989
OpenAlexW4292678762

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.