ArticleNature microbiology2022
Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil.
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Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.
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74citing papers in PubMed, 1 pooled it
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Who cites it
74 citing papers in PubMed, 1 synthesis or guideline pooled it.
- SARS-CoV-2 Genomic Surveillance in Brazil: A Systematic Review with Scientometric Analysis.Viruses · 2022Pooled it
- Impact of vaccine platform and BCG vaccination on antibody responses to COVID-19 vaccination.Frontiers in immunology · 2023Trial
- Nanopore Sequencing for Chikungunya Virus: Principles and Application.Methods in molecular biology (Clifton, N.J.) · 2027Article
- Phylodynamic reconstruction of H1N1pdm09 influenza virus transmission in Brazil: a decade of evolutionary dynamics.Emerging microbes & infections · 2026Article
- The Brazilian Population Tumor Atlas Project: addressing representation in cancer genomics in Brazil.Lancet regional health. Americas · 2026Review
- Genomic epidemiology of SARS-CoV-2 in Peru from 2020 to 2024.Communications medicine · 2026Article
- Exploring the timeline and network interplay of immune mediators in COVID-19 patients according to disease outcome.Frontiers in immunology · 2026Observational
- Enhancing SARS-CoV-2 response capacity in Africa and other centers for research in emerging infectious diseases centres through a collaborative training programme.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2026Article
- Antigenic remodeling of the SARS-CoV-2 Spike N-terminal domain links sequence variability to structural reorganization of a neutralizing antibody supersite.Frontiers in cellular and infection microbiology · 2026Article
- Predicting the evolutionary and epidemiological dynamics of SARS-CoV-2 in South Africa.Virulence · 2025Article
- Five Years of COVID-19 in Tocantins, Brazil: Epidemiology, Vaccination Impact, and SARS-CoV-2 Genomic Dynamics (2020-2025).Viruses · 2025Article
- aPhyloGeo: a Python application for correlating genetic and climatic conditions.Bioinformatics (Oxford, England) · 2025Article
- Analysis of the prevalence, spread, and mutation patterns of SARS-CoV-2 variants: data from COVID-19 testing expansion strategy study in salvador, Northeast Brazil.Scientific reports · 2025Article
- Genomic and spatial epidemiology: lessons learned from SARS-CoV-2 pandemic.Current opinion in HIV and AIDS · 2025Review
- Large-Scale Genomic Analysis of SARS-CoV-2 Omicron BA.5 Emergence, United States.Emerging infectious diseases · 2025Article
- Dynamics of SARS-CoV-2 Mutations in Wastewater Provide Insights into the Circulation of Virus Variants in the Population.International journal of molecular sciences · 2025Article
- Unveiling the Dynamics of SARS-CoV-2 Gamma and Delta Waves in Paraná, Brazil - Delta Displacing a Persistent Gamma Through Alternative Routes of Dispersal.Journal of medical virology · 2025Article
- Biophysics of SARS-CoV-2 spike protein's receptor-binding domain interaction with ACE2 and neutralizing antibodies: from computation to functional insights.Biophysical reviews · 2025Review
- Travel-associated international spread of Oropouche virus beyond the Amazon.Journal of travel medicine · 2025Article
- In vitro enzymatic and cell culture assays for SARS-CoV-2 main protease interaction with ambenonium.Scientific reports · 2025Article
14 more citing papers are in PubMed but not listed here.
Corrections and comments
- Update of
Authors and funding
103 authors.
Marta Giovanetti *Laboratório de Flavivirus, Fundacao Oswaldo Cruz, Rio de Janeiro, Brazil.
Svetoslav Nanev Slavov *Blood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil.
Vagner Fonseca *Laboratório de Genética Celular e Molecular, Instituto de Ciências Biologicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID http://orcid.org/0000-0001-5521-6448
Eduan Wilkinson *Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.ORCID http://orcid.org/0000-0002-2503-9441
Houriiyah Tegally *Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.
José Salvatore Leister Patané *Butantan Institute, São Paulo, Brazil.
Vincent Louis VialaButantan Institute, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-2267-9985
Emmanuel James SanCentre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.ORCID http://orcid.org/0000-0002-5736-664X
Evandra Strazza RodriguesBlood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil.
Elaine Vieira SantosBlood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil.
Flavia AburjaileLaboratório de Genética Celular e Molecular, Instituto de Ciências Biologicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID http://orcid.org/0000-0002-1067-1882
Joilson XavierLaboratório de Genética Celular e Molecular, Instituto de Ciências Biologicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID http://orcid.org/0000-0003-3916-2018
Hegger FritschLaboratório de Genética Celular e Molecular, Instituto de Ciências Biologicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Talita Emile Ribeiro AdelinoLaboratório de Genética Celular e Molecular, Instituto de Ciências Biologicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID http://orcid.org/0000-0002-1471-0084
Felicidade PereiraLaboratório Central de Saúde Pública do Estado da Bahia (LACEN-BA), Salvador, Bahia, Brazil.
Arabela LealLaboratório Central de Saúde Pública do Estado da Bahia (LACEN-BA), Salvador, Bahia, Brazil.
Felipe Campos de Melo IaniLaboratório Central de Saúde Pública do Estado de Minas Gerais (LACEN-MG), Fundação Ezequiel Dias, Belo Horizonte, Minas Gerais, Brazil.ORCID http://orcid.org/0000-0002-3629-8529
Glauco de Carvalho PereiraLaboratório Central de Saúde Pública do Estado de Minas Gerais (LACEN-MG), Fundação Ezequiel Dias, Belo Horizonte, Minas Gerais, Brazil.
Cynthia VazquezLaboratório Central de Salud Pública, Asunción, Paraguay.
Gladys Mercedes Estigarribia SanabriaLaboratório Central de Salud Pública, Asunción, Paraguay.
Elaine Cristina de OliveiraLaboratório Central de Saúde Pública do Estado de Mato Grosso (LACEN-MT), Cuiabá, Mato Grosso, Brazil.
Luiz DemarchiLaboratório Central de Saúde Pública do Estado de Mato Grosso do Sul (LACEN-MS), Campo Grande, Mato Grosso do Sul, Brazil.ORCID http://orcid.org/0000-0001-8693-7897
Julio CrodaUniversidade Federal do Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil.ORCID http://orcid.org/0000-0002-6665-6825
Rafael Dos Santos BezerraBlood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil.
Loyze Paola Oliveira de LimaButantan Institute, São Paulo, Brazil.
Antonio Jorge MartinsButantan Institute, São Paulo, Brazil.
Claudia Renata Dos Santos BarrosButantan Institute, São Paulo, Brazil.
Elaine Cristina MarquezeButantan Institute, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-4987-7757
Jardelina de Souza Todao BernardinoButantan Institute, São Paulo, Brazil.
Debora Botequio MorettiButantan Institute, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-0912-9989
Ricardo Augusto BrassalotiCentro de Genômica Funcional da ESALQ, University of São Paulo, Piracicaba, São Paulo, Brazil.
Raquel de Lello Rocha Campos CassanoCentro de Genômica Funcional da ESALQ, University of São Paulo, Piracicaba, São Paulo, Brazil.
Pilar Drummond Sampaio Corrêa MarianiNGS Soluções Genômicas, Piracicaba, São Paulo, Brazil.
João Paulo KitajimaMendelics Análise Genômica, São Paulo, Brazil.
Bibiana SantosMendelics Análise Genômica, São Paulo, Brazil.
Rodrigo Proto-SiqueiraInstituto de Biologia Molecular, Laboratório Antonello, Rio Grande do Sul, Brazil.
Vlademir Vicente CantarelliUniversidade Federal de Ciencias da Saúde de Porto Alegre (UFCSPA), Universidade Feevale, Grupo Exame Laboratórios, Rio Grande do Sul, Brazil.
Stephane TostaLaboratório de Genética Celular e Molecular, Instituto de Ciências Biologicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Vanessa Brandão NardyLaboratório Central de Saúde Pública do Estado da Bahia (LACEN-BA), Salvador, Bahia, Brazil.
Luciana Reboredo de Oliveira da SilvaLaboratório Central de Saúde Pública do Estado da Bahia (LACEN-BA), Salvador, Bahia, Brazil.
Marcela Kelly Astete GómezLaboratório Central de Saúde Pública do Estado da Bahia (LACEN-BA), Salvador, Bahia, Brazil.
Jaqueline Gomes LimaLaboratório Central de Saúde Pública do Estado da Bahia (LACEN-BA), Salvador, Bahia, Brazil.
Adriana Aparecida RibeiroLaboratório Central de Saúde Pública do Estado de Minas Gerais (LACEN-MG), Fundação Ezequiel Dias, Belo Horizonte, Minas Gerais, Brazil.
Natália Rocha GuimarãesLaboratório Central de Saúde Pública do Estado de Minas Gerais (LACEN-MG), Fundação Ezequiel Dias, Belo Horizonte, Minas Gerais, Brazil.
Luiz Takao WatanabeLaboratório Central de Saúde Pública do Estado de Mato Grosso (LACEN-MT), Cuiabá, Mato Grosso, Brazil.
Luana Barbosa Da SilvaLaboratório Central de Saúde Pública do Estado de Mato Grosso (LACEN-MT), Cuiabá, Mato Grosso, Brazil.
Raquel da Silva FerreiraLaboratório Central de Saúde Pública do Estado de Mato Grosso (LACEN-MT), Cuiabá, Mato Grosso, Brazil.
Mara Patricia F da PenhaVigilancia em Saúde do Estado de Mato Grosso, Cuiabá, Mato Grosso, Brazil.
María José OrtegaLaboratório Central de Salud Pública, Asunción, Paraguay.
Andrea Gómez de la FuenteLaboratório Central de Salud Pública, Asunción, Paraguay.
Shirley VillalbaLaboratório Central de Salud Pública, Asunción, Paraguay.
Juan ToralesLaboratório Central de Salud Pública, Asunción, Paraguay.
María Liz GamarraLaboratório Central de Salud Pública, Asunción, Paraguay.
Carolina AquinoLaboratório Central de Salud Pública, Asunción, Paraguay.
Gloria Patricia Martínez FigueredoLaboratório Central de Salud Pública, Asunción, Paraguay.
Wellington Santos FavaUniversidade Federal do Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil.
Ana Rita C Motta-CastroUniversidade Federal do Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil.
James VenturiniUniversidade Federal do Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil.
Sandra Maria do Vale Leone de OliveiraUniversidade Federal do Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil.
Crhistinne Cavalheiro Maymone GonçalvesSecretaria de Saude do Estado do Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil.
Maria do Carmo Debur RossaLaboratório Central de Saúde Pública do Estado do Paraná (Lacen-PR), Curitiba, Paraná, Brazil.
Guilherme Nardi BeckerLaboratório Central de Saúde Pública do Estado do Paraná (Lacen-PR), Curitiba, Paraná, Brazil.
Mayra Presibella GiacominiLaboratório Central de Saúde Pública do Estado do Paraná (Lacen-PR), Curitiba, Paraná, Brazil.
Nelson Quallio MarquesLaboratório Central de Saúde Pública do Estado do Paraná (Lacen-PR), Curitiba, Paraná, Brazil.
Irina Nastassja RiedigerLaboratório Central de Saúde Pública do Estado do Paraná (Lacen-PR), Curitiba, Paraná, Brazil.
Sonia RaboniHospital de Clínicas da Universidade Federal do Paraná, Curitiba, Paraná, Brazil.ORCID http://orcid.org/0000-0001-7907-7585
Gabriela MattosoLaboratório de Virologia Molecular, Instituto Carlos Chagas/Fiocruz-PR, Curitiba, Paraná, Brazil.
Allan D CataneoLaboratório de Virologia Molecular, Instituto Carlos Chagas/Fiocruz-PR, Curitiba, Paraná, Brazil.
Camila ZanlucaLaboratório de Virologia Molecular, Instituto Carlos Chagas/Fiocruz-PR, Curitiba, Paraná, Brazil.ORCID http://orcid.org/0000-0001-7350-9105
Claudia N Duarte Dos SantosLaboratório de Virologia Molecular, Instituto Carlos Chagas/Fiocruz-PR, Curitiba, Paraná, Brazil.
Patricia Akemi AssatoDepartment of Bioprocesses and Biotechnology, School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil.
Felipe Allan da Silva da CostaDepartment of Bioprocesses and Biotechnology, School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil.
Mirele Daiana PoletiDepartment of Veterinary Medicine, School of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil.
Jessika Cristina Chagas LesbonDepartment of Veterinary Medicine, School of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil.
Elisangela Chicaroni MattosDepartment of Veterinary Medicine, School of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil.
Cecilia Artico BanhoMedicine School of São José do Rio Preto (FAMERP), São José do Rio Preto, São Paulo, Brazil.
Lívia SacchettoMedicine School of São José do Rio Preto (FAMERP), São José do Rio Preto, São Paulo, Brazil.ORCID http://orcid.org/0000-0001-9716-6899
Marília Mazzi MoraesMedicine School of São José do Rio Preto (FAMERP), São José do Rio Preto, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-3545-8551
Rejane Maria Tommasini GrottoDepartment of Bioprocesses and Biotechnology, School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil.
Jayme A Souza-NetoDepartment of Bioprocesses and Biotechnology, School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil.
Maurício Lacerda NogueiraMedicine School of São José do Rio Preto (FAMERP), São José do Rio Preto, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-1102-2419
Heidge FukumasuDepartment of Veterinary Medicine, School of Animal Science and Food Engineering, University of São Paulo, Pirassununga, São Paulo, Brazil.
Luiz Lehmann CoutinhoCentro de Genômica Funcional da ESALQ, University of São Paulo, Piracicaba, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-7266-8881
Rodrigo Tocantins CaladoBlood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil.
Raul Machado NetoButantan Institute, São Paulo, Brazil.
Ana Maria Bispo de FilippisLaboratório de Flavivirus, Fundacao Oswaldo Cruz, Rio de Janeiro, Brazil.
Rivaldo Venancio da CunhaFundação Oswaldo Cruz, Bio-Manguinhos, Rio de Janeiro, Rio de Janeiro, Brazil.
Carla FreitasCoordenação Geral dos Laboratórios de Saúde Pública/Secretaria de Vigilância em Saúde, Ministério da Saúde, (CGLAB/SVS-MS), Brasília, Distrito Federal, Brazil.
Cassio Roberto Leonel PeterkaCoordenação Geral das Arboviroses, Secretaria de Vigilância em Saúde/Ministério da Saúde (CGARB/SVS-MS), Brasília, Distrito Federal, Brazil.
Cássia de Fátima Rangel FernandesDepartamento de Imunização e Doenças Transmissíveisa/Secretaria de Vigilancia em Saude, Ministerio da Saude, Brasılia, Distrito Federal, Brazil.
Wildo NavegantesPan American Health Organization (PAHO)/World Health Organization (WHO), Brasilia, Distrito Federal, Brazil.ORCID http://orcid.org/0000-0002-6856-4094
Rodrigo Fabiano do Carmo SaidPan American Health Organization (PAHO)/World Health Organization (WHO), Brasilia, Distrito Federal, Brazil.
Carlos F Campelo de A E MeloPan American Health Organization (PAHO)/World Health Organization (WHO), Brasilia, Distrito Federal, Brazil.ORCID http://orcid.org/0000-0003-0581-5535
Maria AlmironPan American Health Organization (PAHO)/World Health Organization (WHO), Brasilia, Distrito Federal, Brazil.
José LourençoDepartment of Zoology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-9318-2581
Tulio de OliveiraKwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Edward C HolmesMarie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-9596-3552
Ricardo HaddadButantan Institute, São Paulo, Brazil.
Sandra Coccuzzo SampaioButantan Institute, São Paulo, Brazil. aroli.coccuzzo@butantan.gov.br.
Maria Carolina EliasButantan Institute, São Paulo, Brazil. arolina.eliassabbaga@butantan.gov.br.ORCID http://orcid.org/0000-0002-0501-8280
Simone KashimaBlood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil. skashima@hemocentro.fmrp.usp.br.
Luiz Carlos Junior de AlcantaraLaboratório de Flavivirus, Fundacao Oswaldo Cruz, Rio de Janeiro, Brazil. luiz.alcantara@ioc.fiocruz.br.ORCID http://orcid.org/0000-0002-6769-9931
Dimas Tadeu CovasBlood Center of Ribeirão Preto, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil. dimas.covas@butantan.gov.br.
Funding
University of Washington Arboviral Research Network (UWARN)U01AI151698 · NIAID · UNIVERSITY OF WASHINGTON · PI Michael Gale, PETER MACGARR RABINOWITZ · 2020 to 2026
$13.3MCoordinating Research on Emerging Arboviral Threats Encompassing the Neotropics II (CREATE-NEO II)U01AI151807 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Kathryn Alyce Hanley, MAURICIO Lacerda NOGUEIRA · 2020 to 2026
$9.8MNIAID NIH HHS U01 AI151698NIAID NIH HHS U01 AI151807World Health Organization 001
Abstract
The high numbers of COVID-19 cases and deaths in Brazil have made Latin America an epicentre of the pandemic. SARS-CoV-2 established sustained transmission in Brazil early in the pandemic, but important gaps remain in our understanding of virus transmission dynamics at a national scale. We use 17,135 near-complete genomes sampled from 27 Brazilian states and bordering country Paraguay. From March to November 2020, we detected co-circulation of multiple viral lineages that were linked to multiple importations (predominantly from Europe). After November 2020, we detected large, local transmission clusters within the country. In the absence of effective restriction measures, the epidemic progressed, and in January 2021 there was emergence and onward spread, both within and abroad, of variants of concern and variants under monitoring, including Gamma (P.1) and Zeta (P.2). We also characterized a genomic overview of the epidemic in Paraguay and detected evidence of importation of SARS-CoV-2 ancestor lineages and variants of concern from Brazil. Our findings show that genomic surveillance in Brazil enabled assessment of the real-time spread of emerging SARS-CoV-2 variants.
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COVID-19SARS-CoV-2BrazilGenomicsHumans
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