Evidence map›Paper›PMID 35981753›Full record

ArticleGenes & development2022

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription.

Abderhman Abuhashem, Alexandra G Chivu, Yixin Zhao, Edward J Rice, Adam Siepel, Charles G Danko, Anna-Katerina Hadjantonakis

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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  12. A degron-based approach to manipulate Eomes functions in the context of the developing mouse embryo.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Abderhman AbuhashemDevelopmental Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.ORCID http://orcid.org/0000-0002-6135-5679
Alexandra G ChivuBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York 14853, USA.
Yixin ZhaoSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.ORCID http://orcid.org/0000-0002-7856-2818
Edward J RiceBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York 14853, USA.
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.ORCID http://orcid.org/0000-0002-3557-7219
Charles G DankoBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York 14853, USA.
Anna-Katerina HadjantonakisDevelopmental Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.ORCID http://orcid.org/0000-0002-7580-5124
Cornell University · USCold Spring Harbor Laboratory · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Evolutionary Human Genomics: Demography, Natural Selection, and Transcriptional RegulationR35GM127070 · NIGMS · COLD SPRING HARBOR LABORATORY · PI Adam Charles Siepel · 2018 to 2026
$4.7M
Mechanisms driving cell fate specification and morphogenesis in the blastocystR01HD094868 · NICHD · SLOAN-KETTERING INST CAN RESEARCH · PI ANNA-KATERINA HADJANTONAKIS · 2018 to 2026
$4.2M
Phenotyping Early Embryonic Lethal Knockout Mice to Identify Essential Genes with Previously Uncharacterized Roles in Pre-implantation Development, Gastrulation, Turning, and PlacentationR01HD086478 · NICHD · SLOAN-KETTERING INST CAN RESEARCH · PI HADJANTONAKIS, ANNA-KATERINA · 2016 to 2020
$3.4M
The gut endoderm: origin, formation and fateR01DK127821 · NIDDK · SLOAN-KETTERING INST CAN RESEARCH · PI ANNA-KATERINA HADJANTONAKIS · 2021 to 2026
$3.4M
Evolution of Chromatin Architecture and Transcriptional Regulation in MammalsR01HG010346 · NHGRI · CORNELL UNIVERSITY · PI DANKO, CHARLES GRAHE, SIEPEL, ADAM CHARLES · 2019 to 2022
$2.7M
Mapping RNA polymerase in tissue samples with ChRO-seq.R01HG009309 · NHGRI · CORNELL UNIVERSITY · PI DANKO, CHARLES GRAHE · 2017 to 2021
$1.9M
Dissecting the Role of RNA Pol II Pausing in Early Mammalian DevelopmentF30HD103398 · NICHD · WEILL MEDICAL COLL OF CORNELL UNIV · PI ABUHASHEM, ABDERHMAN ANEES · 2021 to 2024
$178k
NCI NIH HHS P30 CA008748NHGRI NIH HHS R01 HG009309NHGRI NIH HHS R01 HG010346NICHD NIH HHS F30 HD103398NICHD NIH HHS R01 HD086478NICHD NIH HHS R01 HD094868NIDDK NIH HHS R01 DK127821NIGMS NIH HHS R35 GM127070NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

Promoter-proximal RNA Pol II pausing is a critical step in transcriptional control. Pol II pausing has been predominantly studied in tissue culture systems. While Pol II pausing has been shown to be required for mammalian development, the phenotypic and mechanistic details of this requirement are unknown. Here, we found that loss of Pol II pausing stalls pluripotent state transitions within the epiblast of the early mouse embryo. Using

Indexed as

degrondTAGembryonic stem cellsepiblastmouse embryoNELFpausingpluripotencytranscription

Identifiers

PMID35981753
PMCPMC9480856
OpenAlexW4292212893

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.