Evidence map›Paper›PMID 35980975›Full record

ArticlePloS one2022

Legume NCRs and nodule-specific defensins of actinorhizal plants-Do they share a common origin?

Marco Guedes Salgado, Irina V Demina, Pooja Jha Maity, Anurupa Nagchowdhury, Andrea Caputo, Elizaveta Krol, Christoph Loderer, Günther Muth, Anke Becker, Katharina Pawlowski

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Marco Guedes SalgadoDepartment of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.
Irina V DeminaDepartment of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.
Pooja Jha MaityDepartment of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.
Anurupa NagchowdhuryDepartment of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.
Andrea CaputoDepartment of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.
Elizaveta KrolCenter for Synthetic Microbiology, Philipps-Universität Marburg, Marburg, Germany.
Christoph LodererDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.
Günther MuthDepartment of Microbial Bioactive Compounds, Interfaculty Institute of Microbiology and Infection Medicine (IMIT), Eberhard Karls University Tübingen, Tübingen, Germany.
Anke BeckerCenter for Synthetic Microbiology, Philipps-Universität Marburg, Marburg, Germany.
Katharina PawlowskiDepartment of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.ORCID 0000-0003-2693-885X
Stockholm University · SEPhilipps University of Marburg · DEUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The actinorhizal plant Datisca glomerata (Datiscaceae, Cucurbitales) establishes a root nodule symbiosis with actinobacteria from the earliest branching symbiotic Frankia clade. A subfamily of a gene family encoding nodule-specific defensin-like cysteine-rich peptides is highly expressed in D. glomerata nodules. Phylogenetic analysis of the defensin domain showed that these defensin-like peptides share a common evolutionary origin with nodule-specific defensins from actinorhizal Fagales and with nodule-specific cysteine-rich peptides (NCRs) from legumes. In this study, the family member with the highest expression levels, DgDef1, was characterized. Promoter-GUS studies on transgenic hairy roots showed expression in the early stage of differentiation of infected cells, and transient expression in the nodule apex. DgDef1 contains an N-terminal signal peptide and a C-terminal acidic domain which are likely involved in subcellular targeting and do not affect peptide activity. In vitro studies with E. coli and Sinorhizobium meliloti 1021 showed that the defensin domain of DgDef1 has a cytotoxic effect, leading to membrane disruption with 50% lethality for S. meliloti 1021 at 20.8 μM. Analysis of the S. meliloti 1021 transcriptome showed that, at sublethal concentrations, DgDef1 induced the expression of terminal quinol oxidases, which are associated with the oxidative stress response and are also expressed during symbiosis. Overall, the changes induced by DgDef1 are reminiscent of those of some legume NCRs, suggesting that nodule-specific defensin-like peptides were part of the original root nodule toolkit and were subsequently lost in most symbiotic legumes, while being maintained in the actinorhizal lineages.

Indexed as

FabaceaeCysteineDefensinsEscherichia coliGene Expression Regulation, PlantNitrogen FixationPeptidesPhylogenyPlantsRoot Nodules, PlantSymbiosisCysteineDefensinsPeptides

Identifiers

PMID35980975
PMCPMC9387825
OpenAlexW4293068873

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.