Evidence map›Paper›PMID 35980588›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

FlyClear: A Tissue-Clearing Technique for High-Resolution Microscopy of Drosophila.

Marko Pende, Saiedeh Saghafi, Klaus Becker, Thomas Hummel, Hans-Ulrich Dodt

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Sleep-dependent clearance of brain lipids by peripheral blood cells.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Marko PendeMount Desert Island Biological Laboratory (MDIBL), Salisbury, USA. mpende@mdibl.org.
Saiedeh SaghafiDepartment for Bioelectronics, FKE, Vienna University of Technology, Vienna, Austria.
Klaus BeckerDepartment for Bioelectronics, FKE, Vienna University of Technology, Vienna, Austria.
Thomas HummelDepartment of Neurobiology, University of Vienna, Vienna, Austria.
Hans-Ulrich DodtSection for Bioelectronics, Center for Brain Research, Medical University of Vienna, Vienna, Austria. hans-ulrich.dodt@meduniwien.ac.at.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescently labeled transgenic lines of Drosophila melanogaster are a powerful routine tool in fly laboratories. The possibility to fluorescently visualize individual cell populations or entire tissues and the constantly improving microscopy technologies such as two-photon or light-sheet applications, with deep tissue imaging, hold great potential to address central biological questions at an organismic level. However, strong pigmentation and the opaque nature of the D. melanogaster cuticle hinder the penetration of visible light into internal tissues, thereby limiting the application of fluorescent microscopes to analyses of the outermost surfaces of intact samples. In addition, tissue-induced light scattering and optical aberrations quickly blur the view and, hence, require tissue sectioning for further investigation. We have developed a tissue-clearing and depigmentation approach (FlyClear), which preserves endogenous fluorescent signals and is applicable to various developmental stages ranging from larvae to adult fruit flies (Pende et al. Nature communications 9:4731, 2018). In this chapter, we provide a detailed protocol of the experimental steps involved.

Indexed as

DrosophilaDrosophila melanogasterAnimalsAnimals, Genetically ModifiedImaging, Three-DimensionalLarvaMicroscopy, FluorescenceDepigmentationFruit flyTissue clearingTransgenic fluorescent signal preservation

Identifiers

PMID35980588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.