Evidence map›Paper›PMID 35980576›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

CRISPR-/Cas9-Mediated Precise and Efficient Genome Editing in Drosophila.

Kevin G Nyberg, Richard W Carthew

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kevin G NybergDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.
Richard W CarthewDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA. r-carthew@northwestern.edu.
Northwestern University · US

Funding

YEAST ER MOLECULAR CHAPERONE TRANSLOCATION: GENOME DATABANK HOMOLOGSP41RR006009 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI BLOOD, PHILIP D · 1990 to 2011
$22.0M
Non-coding RNAs and their mechanisms and functions-RenewalR35GM118144 · NIGMS · NORTHWESTERN UNIVERSITY · PI Richard W. CARTHEW · 2016 to 2026
$6.8M
Reconstructing positional information in the eye from scRNA-seq and relating it to signal transductionR21EY032233 · NEI · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 2021 to 2022
$413k
Mechanistic investigation of long non-coding RNAs in Drosophila oogenesisF32GM122349 · NIGMS · NORTHWESTERN UNIVERSITY · PI NYBERG, KEVIN GLENN · 2017 to 2019
$184k
NCRR NIH HHS P41 RR006009NEI NIH HHS R21 EY032233NIGMS NIH HHS F32 GM122349NIGMS NIH HHS R35 GM118144
6 · The paper itself

Abstract

The CRISPR/Cas9 system provides the means to make precise and purposeful modifications to the genome via homology-directed repair (HDR). In Drosophila, a wide variety of tools provide flexibility to achieve these ends. Here, we detail a method to generate precise genome edits via HDR that is efficient and broadly applicable to any Drosophila stock or species. sgRNAs are first tested for their cleavage efficiency by injecting embryos with Cas9/sgRNA ribonucleoproteins using commercially available Cas9 protein. Using an empirically validated sgRNA, HDR is performed using a donor repair plasmid that carries two transformation markers. A fluorescent eye marker that can be seamlessly removed using PiggyBac transposase marks integration of the repair sequence. A counter-selection marker that produces small rough eyes via RNAi against eyes absent is used to screen against imprecise HDR events. Altogether, the enhancements implemented in this method expand the ease and scope of achieving precise CRISPR/Cas9 genome edits in Drosophila.

Indexed as

CRISPR-Cas SystemsGene EditingAnimalsCRISPR-Associated Protein 9DrosophilaRecombinational DNA RepairCRISPR-Associated Protein 9CRISPRDrosophilaGenome editingGermlineHomology-directed repair

Identifiers

PMID35980576
PMCPMC10027364
OpenAlexW4295752495

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.